RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 IGKV2-24A0A0C4DH68 120 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 PRB2P02812 416 aaPredicted RBP8.73□□□□□ -1.01
SCN4A-201ENST00000435607 A0A0B4J2C4 111 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 USP17L23D6RBM5 183 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 K7EMT4 169 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 UPK3BQ9BT76 320 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 RLFQ13129 1914 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 PRR15LQ9BU68 103 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 TRBV10-2A0A0K0K1G8 114 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 A0A1W2PPM0 123 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 NDUFS7O75251 213 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 AGPAT4-IT1Q9H0P7 198 aa8.73□□□□□ -1.01
SCN4A-201ENST00000435607 VWA8A3KMH1 1905 aa8.72□□□□□ -1.01
SCN4A-201ENST00000435607 SONP18583 2426 aaKnown RBP8.72□□□□□ -1.01
SCN4A-201ENST00000435607 ATOX1O00244 68 aa8.72□□□□□ -1.01
SCN4A-201ENST00000435607 C15orf65H3BRN8 121 aa8.72□□□□□ -1.01
SCN4A-201ENST00000435607 COX7BP24311 80 aa8.72□□□□□ -1.01
SCN4A-201ENST00000435607 DUX4L9Q6RFH8 374 aaPredicted RBP8.72□□□□□ -1.01
SCN4A-201ENST00000435607 CRYGDP07320 174 aa8.71□□□□□ -1.01
SCN4A-201ENST00000435607 ETDBQ3ZM63 59 aa8.71□□□□□ -1.01
SCN4A-201ENST00000435607 ANKRD39Q53RE8 183 aa8.71□□□□□ -1.01
SCN4A-201ENST00000435607 IGF2-ASQ6U949 168 aa8.71□□□□□ -1.01
SCN4A-201ENST00000435607 C16orf54Q6UWD8 224 aa8.71□□□□□ -1.01
SCN4A-201ENST00000435607 ZNF664Q8N3J9 261 aa8.71□□□□□ -1.01
SCN4A-201ENST00000435607 K7EP34 96 aa8.71□□□□□ -1.02
SCN4A-201ENST00000435607 NTN5Q8WTR8 489 aaPredicted RBP8.71□□□□□ -1.02
SCN4A-201ENST00000435607 HIGD2AQ9BW72 106 aa8.71□□□□□ -1.02
SCN4A-201ENST00000435607 DSCAMO60469 2012 aa8.71□□□□□ -1.02
SCN4A-201ENST00000435607 POU2AF1Q16633 256 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 C5orf56Q8N8D9 126 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 ZNF706Q9Y5V0 76 aaPredicted RBP8.7□□□□□ -1.02
SCN4A-201ENST00000435607 SMIM9A6NGZ8 99 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 BLCAPP62952 87 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 MED12LQ86YW9 2145 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 ANAPC1Q9H1A4 1944 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 C12orf74Q32Q52 190 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 PYY3Q5JQD4 70 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 CYYR1Q96J86 154 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 V9GYV3 84 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 LINC01548A6NM66 108 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 TMEM131Q92545 1883 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 KLHDC3Q9BQ90 382 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 DEFB4AO15263 64 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 NPSP0C0P6 89 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 CRIPAKQ8N1N5 446 aa8.7□□□□□ -1.02
SCN4A-201ENST00000435607 UFSP1Q6NVU6 142 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 TMEM61Q8N0U2 210 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 UBE2D3P61077 147 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 DEFB131BA0A096LNP1 70 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 IGHV7-81A0A0B4J1V7 117 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 H3BMG7 143 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 CCL25O15444 150 aa8.69□□□□□ -1.02
SCN4A-201ENST00000435607 IGLC7A0M8Q6 106 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 LYRM9A8MSI8 78 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 SPG11Q96JI7 2443 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 MUC6Q6W4X9 2439 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 PLXNA3P51805 1871 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 ZNF581Q9P0T4 197 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 LRRC75A-AS1Q8N1F1 130 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 IGHV1-58A0A0C4DH39 117 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 TRBV10-1A0A0K0K1A3 114 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 K7EP13 123 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 ARTNQ5T4W7 220 aa8.68□□□□□ -1.02
SCN4A-201ENST00000435607 DNAJC9-AS1A6NH13 148 aa8.67□□□□□ -1.02
SCN4A-201ENST00000435607 DIAPH2-AS1Q14236 149 aa8.67□□□□□ -1.02
SCN4A-201ENST00000435607 GREB1LQ9C091 1923 aaPredicted RBP8.67□□□□□ -1.02
SCN4A-201ENST00000435607 LY6G6EA0A0G2JKS1 128 aa8.67□□□□□ -1.02
SCN4A-201ENST00000435607 PRRC2AP48634 2157 aaKnown RBP8.67□□□□□ -1.02
SCN4A-201ENST00000435607 GRNP28799 593 aaKnown RBP8.67□□□□□ -1.02
SCN4A-201ENST00000435607 FAM19A1Q7Z5A9 133 aa8.67□□□□□ -1.02
SCN4A-201ENST00000435607 DKK2Q9UBU2 259 aa8.67□□□□□ -1.02
SCN4A-201ENST00000435607 TAX1BP3O14907 124 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 PLA2G5P39877 138 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 ODF1Q14990 250 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 Q8N1Y9 231 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 ZSWIM8A7E2V4 1837 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 BPY2O14599 106 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 MAJINQ3KP22 176 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 SERP1Q9Y6X1 66 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 A4D1N5 150 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 RPL39LQ96EH5 51 aaKnown RBP8.66□□□□□ -1.02
SCN4A-201ENST00000435607 SS18L2Q9UHA2 77 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 MED14OSP0DP75 135 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 LOXL1Q08397 574 aaPredicted RBP8.66□□□□□ -1.02
SCN4A-201ENST00000435607 OTOGLQ3ZCN5 2332 aa8.66□□□□□ -1.02
SCN4A-201ENST00000435607 NCOA6Q14686 2063 aaPredicted RBP8.66□□□□□ -1.02
SCN4A-201ENST00000435607 TNRC6BQ9UPQ9 1833 aaKnown RBP8.65□□□□□ -1.02
SCN4A-201ENST00000435607 IGLV11-55A0A075B6I3 123 aa8.65□□□□□ -1.02
SCN4A-201ENST00000435607 TRAV26-1A0A087WT03 109 aa8.65□□□□□ -1.02
SCN4A-201ENST00000435607 IGKV3D-7A0A0C4DH55 119 aa8.65□□□□□ -1.02
SCN4A-201ENST00000435607 IGKV1-17P01599 117 aa8.65□□□□□ -1.02
SCN4A-201ENST00000435607 SPTSSBQ8NFR3 76 aa8.65□□□□□ -1.02
SCN4A-201ENST00000435607 FAM110AQ9BQ89 295 aa8.65□□□□□ -1.02
SCN4A-201ENST00000435607 NLRC5Q86WI3 1866 aa8.65□□□□□ -1.03
SCN4A-201ENST00000435607 LINC00322Q6ZN03 302 aaPredicted RBP8.65□□□□□ -1.03
SCN4A-201ENST00000435607 DSCAML1Q8TD84 2053 aa8.65□□□□□ -1.03
SCN4A-201ENST00000435607 K7ERJ3 54 aa8.65□□□□□ -1.03
SCN4A-201ENST00000435607 CTSZQ9UBR2 303 aa8.65□□□□□ -1.03
SCN4A-201ENST00000435607 POLR3KQ9Y2Y1 108 aaPredicted RBP8.64□□□□□ -1.03
SCN4A-201ENST00000435607 LECT2O14960 151 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms