RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 FAM223BA6NKX1 122 aa11.76□□□□□ -0.53
SCARF1-203ENST00000434376 FAM223AQ8IWN6 122 aa11.76□□□□□ -0.53
SCARF1-203ENST00000434376 KNCNA6PVL3 124 aa11.76□□□□□ -0.53
SCARF1-203ENST00000434376 RNF185Q96GF1 192 aa11.76□□□□□ -0.53
SCARF1-203ENST00000434376 SIVA1O15304 175 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 IGLC6P0CF74 106 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 GAGE13Q4V321 117 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 SCGB1D4Q6XE38 83 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 ZNF256Q9Y2P7 627 aaPredicted RBP11.75□□□□□ -0.53
SCARF1-203ENST00000434376 IGHV4OR15-8A0A075B7B6 117 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 A0A087WW49 117 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 IGLL5B9A064 214 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 ZNF575Q86XF7 245 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 WFDC11Q8NEX6 87 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 DPF1Q92782 380 aa11.75□□□□□ -0.53
SCARF1-203ENST00000434376 CD300EQ496F6 205 aaPredicted RBP11.74□□□□□ -0.53
SCARF1-203ENST00000434376 SPAG8Q99932 426 aaPredicted RBP11.74□□□□□ -0.53
SCARF1-203ENST00000434376 HHLA3Q9XRX5 114 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 IGHV7-4-1A0A0J9YVY3 117 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 NDUFA4O00483 81 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 APOMO95445 188 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 C12orf74Q32Q52 190 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 FAM159AQ6UWV7 190 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 C9orf139Q6ZV77 190 aa11.74□□□□□ -0.53
SCARF1-203ENST00000434376 NDUFS8O00217 210 aa11.73□□□□□ -0.53
SCARF1-203ENST00000434376 SRSF9Q13242 221 aaKnown RBP eCLIP11.73□□□□□ -0.53
SCARF1-203ENST00000434376 MRPL16Q9NX20 251 aaKnown RBP11.73□□□□□ -0.53
SCARF1-203ENST00000434376 A0A1B0GV72 72 aa11.73□□□□□ -0.53
SCARF1-203ENST00000434376 ASIPP42127 132 aa11.73□□□□□ -0.53
SCARF1-203ENST00000434376 TMEM190Q8WZ59 177 aa11.73□□□□□ -0.53
SCARF1-203ENST00000434376 NXT2Q9NPJ8 142 aaKnown RBP11.73□□□□□ -0.53
SCARF1-203ENST00000434376 MUC4Q99102 2169 aa11.73□□□□□ -0.53
SCARF1-203ENST00000434376 CKS1BP61024 79 aa11.73□□□□□ -0.53
SCARF1-203ENST00000434376 SMPXQ9UHP9 88 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 OR11H12B2RN74 326 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 PSMB2P49721 201 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 ZFAND2AQ8N6M9 145 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 OR11H1Q8NG94 326 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 OR11H2Q8NH07 326 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 C20orf78Q9BR46 151 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 U3KQK5 164 aa11.72□□□□□ -0.53
SCARF1-203ENST00000434376 FOXI2Q6ZQN5 318 aa11.71□□□□□ -0.53
SCARF1-203ENST00000434376 SPANXB1Q9NS25 103 aaPredicted RBP11.71□□□□□ -0.53
SCARF1-203ENST00000434376 PGPEP1Q9NXJ5 209 aa11.71□□□□□ -0.53
SCARF1-203ENST00000434376 TRAV21A0A0B4J279 112 aa11.71□□□□□ -0.54
SCARF1-203ENST00000434376 HOXD3P31249 432 aaPredicted RBP11.71□□□□□ -0.54
SCARF1-203ENST00000434376 USMG5Q96IX5 58 aa11.71□□□□□ -0.54
SCARF1-203ENST00000434376 MDFICQ9P1T7 246 aa11.71□□□□□ -0.54
SCARF1-203ENST00000434376 APRG1Q8IVJ8 170 aa11.7□□□□□ -0.54
SCARF1-203ENST00000434376 PTH2Q96A98 100 aa11.7□□□□□ -0.54
SCARF1-203ENST00000434376 ZNF56Q15929 161 aa11.7□□□□□ -0.54
SCARF1-203ENST00000434376 LINC01559Q495D7 138 aa11.7□□□□□ -0.54
SCARF1-203ENST00000434376 ATP5LO75964 103 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 DEFB131AP59861 70 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 LAGE3Q14657 143 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 ATP6V0BQ99437 205 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 H7C2G1 150 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 TCTEX1D4Q5JR98 221 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 SCGB3A1Q96QR1 104 aa11.69□□□□□ -0.54
SCARF1-203ENST00000434376 SYT8Q8NBV8 401 aa11.68□□□□□ -0.54
SCARF1-203ENST00000434376 CHTOPQ9Y3Y2 248 aaKnown RBP11.68□□□□□ -0.54
SCARF1-203ENST00000434376 TRBV6-1A0A0K0K1D8 114 aa11.68□□□□□ -0.54
SCARF1-203ENST00000434376 F8W1H4 67 aa11.68□□□□□ -0.54
SCARF1-203ENST00000434376 C9orf47Q6ZRZ4 202 aa11.68□□□□□ -0.54
SCARF1-203ENST00000434376 VWFP04275 2813 aa11.68□□□□□ -0.54
SCARF1-203ENST00000434376 IGHV3-64A0A075B6Q5 118 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 HLA-DRB4P13762 266 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 HLA-DRB4X5D2U9 266 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 LINC01549A6NIU2 74 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 E9PLD3 99 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 IGHV4-31P0DP07 118 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 KLHL30-AS1Q8NEE0 82 aa11.67□□□□□ -0.54
SCARF1-203ENST00000434376 Q8N8P6 123 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 U3KQE9 123 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 ZNF815PA8K554 130 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 SCGB1C2P0DMR2 95 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 SLC25A16P16260 332 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 ID1P41134 155 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 PHLDA1Q8WV24 401 aaPredicted RBP11.66□□□□□ -0.54
SCARF1-203ENST00000434376 UBE2E2Q96LR5 201 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 TRAV26-1A0A087WT03 109 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 RPL39P62891 51 aaKnown RBP11.66□□□□□ -0.54
SCARF1-203ENST00000434376 GATD1Q8NB37 220 aa11.66□□□□□ -0.54
SCARF1-203ENST00000434376 OTOGQ6ZRI0 2925 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 OVOL1O14753 267 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 SNRPD3P62318 126 aaKnown RBP11.65□□□□□ -0.54
SCARF1-203ENST00000434376 RRN3P1Q2M238 152 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 VPREB3Q9UKI3 123 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 IGHV3-16A0A0C4DH30 117 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 RNASE13Q5GAN3 156 aaKnown RBP11.65□□□□□ -0.54
SCARF1-203ENST00000434376 OPRPNQ99935 248 aaPredicted RBP11.65□□□□□ -0.54
SCARF1-203ENST00000434376 SMR3AQ99954 134 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 HIGD1BQ9P298 99 aa11.65□□□□□ -0.54
SCARF1-203ENST00000434376 P0DMU3 169 aa11.65□□□□□ -0.55
SCARF1-203ENST00000434376 FAM231AP0DMU4 169 aa11.65□□□□□ -0.55
SCARF1-203ENST00000434376 FAM231CP0DMU5 169 aa11.65□□□□□ -0.55
SCARF1-203ENST00000434376 PSMB8P28062 276 aa11.65□□□□□ -0.55
SCARF1-203ENST00000434376 DYNLRB2Q8TF09 96 aa11.65□□□□□ -0.55
SCARF1-203ENST00000434376 DEFB113Q30KQ7 82 aa11.64□□□□□ -0.55
SCARF1-203ENST00000434376 IGLV1-40P01703 118 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms