RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 NSUN5P1Q3KNT7 163 aa10.19□□□□□ -0.78
COL6A3-207ENST00000433762 IGLV4-69A0A075B6H9 119 aa10.18□□□□□ -0.78
COL6A3-207ENST00000433762 C21orf62-AS1Q17RA5 79 aa10.18□□□□□ -0.78
COL6A3-207ENST00000433762 SPANXB1Q9NS25 103 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-207ENST00000433762 TP53TG1Q9Y2A0 90 aa10.18□□□□□ -0.78
COL6A3-207ENST00000433762 ZNF256Q9Y2P7 627 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-207ENST00000433762 ELANEP08246 267 aa10.18□□□□□ -0.78
COL6A3-207ENST00000433762 LINC01356Q8N9X3 169 aa10.18□□□□□ -0.78
COL6A3-207ENST00000433762 ZNF815PA8K554 130 aa10.17□□□□□ -0.78
COL6A3-207ENST00000433762 TSHBP01222 138 aa10.17□□□□□ -0.78
COL6A3-207ENST00000433762 SDHAF1A6NFY7 115 aa10.17□□□□□ -0.78
COL6A3-207ENST00000433762 SCGB2A2Q13296 93 aa10.17□□□□□ -0.78
COL6A3-207ENST00000433762 MYO18BQ8IUG5 2567 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 FAM208BQ5VWN6 2430 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 IGHV1OR15-1A0A075B7D0 117 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 TRAV12-3A0A0B4J271 114 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 AVPP01185 164 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 UBE2D1P51668 147 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 ZNF876PQ49A33 203 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 TRPT1Q86TN4 253 aaKnown RBP10.16□□□□□ -0.78
COL6A3-207ENST00000433762 NFE4Q86UQ8 179 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.16□□□□□ -0.78
COL6A3-207ENST00000433762 IGKV3-7A0A075B6H7 116 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 TRGV11A0A075B6L2 103 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 J3QR89 54 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 HOXA3O43365 443 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-207ENST00000433762 SPRY2O43597 315 aa10.16□□□□□ -0.78
COL6A3-207ENST00000433762 FLNCQ14315 2725 aa10.15□□□□□ -0.78
COL6A3-207ENST00000433762 M0QY20 66 aa10.15□□□□□ -0.78
COL6A3-207ENST00000433762 PIK3CD-AS1Q5SR53 167 aa10.15□□□□□ -0.78
COL6A3-207ENST00000433762 DOPEY1Q5JWR5 2465 aa10.15□□□□□ -0.79
COL6A3-207ENST00000433762 TRAV2A0A0B4J234 112 aa10.15□□□□□ -0.79
COL6A3-207ENST00000433762 A8MTW9 85 aa10.15□□□□□ -0.79
COL6A3-207ENST00000433762 DEFB112Q30KQ8 113 aa10.15□□□□□ -0.79
COL6A3-207ENST00000433762 LYRM7Q5U5X0 104 aa10.15□□□□□ -0.79
COL6A3-207ENST00000433762 CHD6Q8TD26 2715 aa10.15□□□□□ -0.79
COL6A3-207ENST00000433762 F5H697 171 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 UBE2E2Q96LR5 201 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 USP9XQ93008 2570 aaPredicted RBP10.14□□□□□ -0.79
COL6A3-207ENST00000433762 AKAP6Q13023 2319 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 A0A096LNT2 108 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 IGHV4-59P01825 116 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 ZNF688P0C7X2 276 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 SRD5A1P18405 259 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 CRYBA4P53673 196 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 SCGB1D4Q6XE38 83 aa10.14□□□□□ -0.79
COL6A3-207ENST00000433762 MORN3Q6PF18 240 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-207ENST00000433762 PTH2Q96A98 100 aa10.13□□□□□ -0.79
COL6A3-207ENST00000433762 VPREB3Q9UKI3 123 aa10.13□□□□□ -0.79
COL6A3-207ENST00000433762 A0A0J9YY99 117 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 FSHBP01225 129 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 Q8N1Y9 231 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 JPT2Q9H910 190 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 MDFICQ9P1T7 246 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 SPTAN1Q13813 2472 aaKnown RBP10.12□□□□□ -0.79
COL6A3-207ENST00000433762 A0A087WWL8 130 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 EDN2P20800 178 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 AMTNQ6UX39 209 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 PRO0461Q9UI25 63 aa10.12□□□□□ -0.79
COL6A3-207ENST00000433762 TEX48A0A1B0GUV7 120 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 TMEM95Q3KNT9 176 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 GAGE13Q4V321 117 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 SLC25A29Q8N8R3 303 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 CSMD1Q96PZ7 3565 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 UBR5O95071 2799 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-207ENST00000433762 RPL24P83731 157 aaKnown RBP10.11□□□□□ -0.79
COL6A3-207ENST00000433762 SRSF9Q13242 221 aaKnown RBP eCLIP10.11□□□□□ -0.79
COL6A3-207ENST00000433762 ZNF56Q15929 161 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 CD300EQ496F6 205 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-207ENST00000433762 C20orf203Q8NBC4 194 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 ATP6V0E2Q8NHE4 81 aa10.11□□□□□ -0.79
COL6A3-207ENST00000433762 I3L3M4 83 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 PYGO1Q9Y3Y4 419 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 SCGB1A1P11684 91 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 PLA2G2AP14555 144 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 RPL39P62891 51 aaKnown RBP10.1□□□□□ -0.79
COL6A3-207ENST00000433762 Q5PR19 223 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 Q6YL49 198 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 PLEKHB2Q96CS7 222 aa10.1□□□□□ -0.79
COL6A3-207ENST00000433762 LEPROTO15243 131 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 UBE2D3P61077 147 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 UBE2D2P62837 147 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 DLX4Q92988 240 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-207ENST00000433762 SPAG8Q99932 426 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-207ENST00000433762 PGPEP1Q9NXJ5 209 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 H3BMG7 143 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 AMELXQ99217 191 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 LINC00467Q9BRT7 94 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 ZNF702PQ9H963 129 aa10.09□□□□□ -0.79
COL6A3-207ENST00000433762 MRPL16Q9NX20 251 aaKnown RBP10.09□□□□□ -0.79
COL6A3-207ENST00000433762 J3QKU1 62 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 J3QQQ9 107 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 HOXD3P31249 432 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-207ENST00000433762 FAM74A4Q5TZK3 123 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 ZNRF2Q8NHG8 242 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 TMEM223A0PJW6 202 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 IGHV3-30P01768 117 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 IGHV3-30-5P0DP03 117 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 SYNJ2BPP57105 145 aa10.08□□□□□ -0.8
COL6A3-207ENST00000433762 WFDC2Q14508 124 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms