RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 VAMP8Q9BV40 100 aa12.32□□□□□ -0.44
USHBP1-203ENST00000431146 LAMTOR2Q9Y2Q5 125 aa12.32□□□□□ -0.44
USHBP1-203ENST00000431146 OR4C46A6NHA9 309 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 LEPROTL1O95214 131 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 TNFRSF6BO95407 300 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 RBMY1A1P0DJD3 496 aaKnown RBP12.31□□□□□ -0.44
USHBP1-203ENST00000431146 RBMY1CP0DJD4 496 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 RBMY1FQ15415 496 aaKnown RBP12.31□□□□□ -0.44
USHBP1-203ENST00000431146 SPAG8Q99932 426 aaPredicted RBP12.31□□□□□ -0.44
USHBP1-203ENST00000431146 SPATA12Q7Z6I5 190 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 Q8N1Y9 231 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 ZNF479Q96JC4 524 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 MDFICQ9P1T7 246 aa12.31□□□□□ -0.44
USHBP1-203ENST00000431146 SAP30O75446 220 aa12.3□□□□□ -0.44
USHBP1-203ENST00000431146 MED14OSP0DP75 135 aa12.3□□□□□ -0.44
USHBP1-203ENST00000431146 HTN1P15515 57 aa12.3□□□□□ -0.44
USHBP1-203ENST00000431146 TENM1Q9UKZ4 2725 aa12.3□□□□□ -0.44
USHBP1-203ENST00000431146 CRXO43186 299 aaPredicted RBP12.29□□□□□ -0.44
USHBP1-203ENST00000431146 ODF3L2Q3SX64 289 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 ATOH7Q8N100 152 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 JPT2Q9H910 190 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 UQCR10Q9UDW1 63 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 IGHV1OR15-1A0A075B7D0 117 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 A0A096LNJ9 63 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 PRM2P04554 102 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 MAP1LC3AQ9H492 121 aa12.29□□□□□ -0.44
USHBP1-203ENST00000431146 IGHV3-16A0A0C4DH30 117 aa12.28□□□□□ -0.44
USHBP1-203ENST00000431146 MGPP08493 103 aa12.28□□□□□ -0.44
USHBP1-203ENST00000431146 PAM16Q9Y3D7 125 aa12.28□□□□□ -0.44
USHBP1-203ENST00000431146 VWFP04275 2813 aa12.28□□□□□ -0.44
USHBP1-203ENST00000431146 H0Y8G0 127 aa12.28□□□□□ -0.44
USHBP1-203ENST00000431146 OR2K2Q8NGT1 345 aa12.28□□□□□ -0.44
USHBP1-203ENST00000431146 F8P00451 2351 aa12.27□□□□□ -0.44
USHBP1-203ENST00000431146 NRACQ8N912 160 aa12.27□□□□□ -0.45
USHBP1-203ENST00000431146 TMEM70Q9BUB7 260 aa12.27□□□□□ -0.45
USHBP1-203ENST00000431146 MCRIP2Q9BUT9 160 aaKnown RBP12.27□□□□□ -0.45
USHBP1-203ENST00000431146 DPH3P1Q9H4G8 78 aa12.27□□□□□ -0.45
USHBP1-203ENST00000431146 MRPS16Q9Y3D3 137 aaKnown RBP12.27□□□□□ -0.45
USHBP1-203ENST00000431146 TRAV25A0A0B4J276 109 aa12.26□□□□□ -0.45
USHBP1-203ENST00000431146 A8MTW9 85 aa12.26□□□□□ -0.45
USHBP1-203ENST00000431146 PET117Q6UWS5 81 aa12.26□□□□□ -0.45
USHBP1-203ENST00000431146 AP1S3Q96PC3 154 aa12.26□□□□□ -0.45
USHBP1-203ENST00000431146 NXPH4O95158 308 aa12.25□□□□□ -0.45
USHBP1-203ENST00000431146 C9orf85Q96MD7 179 aa12.25□□□□□ -0.45
USHBP1-203ENST00000431146 NOTCH3Q9UM47 2321 aa12.25□□□□□ -0.45
USHBP1-203ENST00000431146 A0A087WWL8 130 aa12.25□□□□□ -0.45
USHBP1-203ENST00000431146 SYS1-DBNDD2H3BUS1 97 aa12.25□□□□□ -0.45
USHBP1-203ENST00000431146 CRLF1O75462 422 aa12.24□□□□□ -0.45
USHBP1-203ENST00000431146 HNRNPA3P51991 378 aaKnown RBP12.24□□□□□ -0.45
USHBP1-203ENST00000431146 RIPPLY3P57055 190 aa12.24□□□□□ -0.45
USHBP1-203ENST00000431146 ODF1Q14990 250 aa12.24□□□□□ -0.45
USHBP1-203ENST00000431146 RPL39LQ96EH5 51 aaKnown RBP12.24□□□□□ -0.45
USHBP1-203ENST00000431146 OR11H12B2RN74 326 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 RASL10AQ92737 203 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 MRAP2Q96G30 205 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 HSPB8Q9UJY1 196 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 ATRQ13535 2644 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 VAMP3Q15836 100 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 NDUFA11Q86Y39 141 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 ZNF747Q9BV97 191 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 MAP1LC3CQ9BXW4 147 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 WFDC10AQ9H1F0 79 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 KIF25-AS1Q9Y6Z4 181 aa12.23□□□□□ -0.45
USHBP1-203ENST00000431146 IGLV2-18A0A075B6J9 118 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 G3V4G9 280 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 FAM74A4Q5TZK3 123 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 STHQ8IWL8 128 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 PMCHL2Q9BQD1 86 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 NXT2Q9NPJ8 142 aaKnown RBP12.22□□□□□ -0.45
USHBP1-203ENST00000431146 IGLV1-51P01701 117 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 HBDP02042 147 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 PF4P02776 101 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 SMIM17P0DL12 118 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 LINC00315P59091 139 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 XCL2Q9UBD3 114 aa12.22□□□□□ -0.45
USHBP1-203ENST00000431146 IGLC3P0DOY3 106 aa12.21□□□□□ -0.45
USHBP1-203ENST00000431146 Q8N8P6 123 aa12.21□□□□□ -0.45
USHBP1-203ENST00000431146 TRGV11A0A075B6L2 103 aa12.2□□□□□ -0.46
USHBP1-203ENST00000431146 ZNF876PQ49A33 203 aa12.2□□□□□ -0.46
USHBP1-203ENST00000431146 SPATA45Q537H7 98 aa12.2□□□□□ -0.46
USHBP1-203ENST00000431146 TEP1Q99973 2627 aaKnown RBP12.2□□□□□ -0.46
USHBP1-203ENST00000431146 F5H697 171 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 CRYBA4P53673 196 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 Q6ZN92 141 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 C18orf15Q96N68 181 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 LINC01587Q99440 93 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 LINC01546A6NGU7 62 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.19□□□□□ -0.46
USHBP1-203ENST00000431146 SYT8Q8NBV8 401 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 SPATA3Q8NHX4 192 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 TMEM158Q8WZ71 300 aa12.19□□□□□ -0.46
USHBP1-203ENST00000431146 IGHV3OR16-12A0A075B7B8 117 aa12.18□□□□□ -0.46
USHBP1-203ENST00000431146 SUMO4Q6EEV6 95 aa12.18□□□□□ -0.46
USHBP1-203ENST00000431146 TRPT1Q86TN4 253 aaKnown RBP12.18□□□□□ -0.46
USHBP1-203ENST00000431146 DEFB104AQ8WTQ1 72 aa12.18□□□□□ -0.46
USHBP1-203ENST00000431146 PGPEP1Q9NXJ5 209 aa12.18□□□□□ -0.46
USHBP1-203ENST00000431146 GAGE12BA1L429 117 aa12.17□□□□□ -0.46
USHBP1-203ENST00000431146 INSP01308 110 aa12.17□□□□□ -0.46
USHBP1-203ENST00000431146 SUMO2P61956 95 aaKnown RBP12.17□□□□□ -0.46
USHBP1-203ENST00000431146 LINC00482Q8N8I6 264 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms