RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 HIF1ANQ9NWT6 349 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 ZNF580Q9UK33 172 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 OTOGQ6ZRI0 2925 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 SETD2Q9BYW2 2564 aaPredicted RBP5.37□□□□□ -1.55
COL28A1-202ENST00000430711 TRAV12-2A0A075B6T6 113 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 E9PLD3 99 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 H3BUX3 64 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 FABP2P12104 132 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 HLA-DRB4P13762 266 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 SUMO2P61956 95 aaKnown RBP5.37□□□□□ -1.55
COL28A1-202ENST00000430711 GTF2H5Q6ZYL4 71 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 ARL6IP6Q8N6S5 226 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 LINC00477Q96M19 166 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 HIGD1BQ9P298 99 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 Q9UF83 564 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 HLA-DRB4X5D2U9 266 aa5.37□□□□□ -1.55
COL28A1-202ENST00000430711 IGLV4-69A0A075B6H9 119 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 C11orf86A6NJI1 115 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 PRSS47A8MTI9 375 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 K7ERU9 68 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 GNLYP22749 145 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 C2orf66Q6UXQ4 117 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 FAM19A4Q96LR4 140 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 SCGB3A1Q96QR1 104 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 PRO0461Q9UI25 63 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 KIF25-AS1Q9Y6Z4 181 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 TRBV7-1A0A0A6YYK4 115 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 EIF4EBP3O60516 100 aaPredicted RBP5.36□□□□□ -1.55
COL28A1-202ENST00000430711 TGFAP01135 160 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 SLC25A16P16260 332 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 ETDBQ3ZM63 59 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 CD300EQ496F6 205 aaPredicted RBP5.36□□□□□ -1.55
COL28A1-202ENST00000430711 MAPK1IP1LQ8NDC0 245 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 MYOZ3Q8TDC0 251 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 PRADC1Q9BSG0 188 aa5.36□□□□□ -1.55
COL28A1-202ENST00000430711 SPANXB1Q9NS25 103 aaPredicted RBP5.36□□□□□ -1.55
COL28A1-202ENST00000430711 CHTOPQ9Y3Y2 248 aaKnown RBP5.36□□□□□ -1.55
COL28A1-202ENST00000430711 IGHV4-30-2A0A087WSY4 118 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 TMEM238C9JI98 176 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 F8VRH5 84 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 ATP5LO75964 103 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 PF4V1P10720 104 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 COX6B1P14854 86 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 FHL3Q13643 280 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 ZFP2Q6ZN57 461 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 S100A7AQ86SG5 101 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 PTH2Q96A98 100 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 TOMM6Q96B49 74 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 ZNF479Q96JC4 524 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 HIST1H4GQ99525 98 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 RHPN1-AS1Q9BWJ2 59 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 GTSF1LQ9H1H1 148 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 MDFICQ9P1T7 246 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 MOB4Q9Y3A3 225 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 TRAV12-3A0A0B4J271 114 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 IGHV1-69DA0A0B4J2H0 117 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 IGHV1-69P01742 117 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 S100A4P26447 101 aaKnown RBP5.35□□□□□ -1.55
COL28A1-202ENST00000430711 SUMO4Q6EEV6 95 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 ZNRF2Q8NHG8 242 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 TMEM190Q8WZ59 177 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 DUX5Q96PT3 197 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 PHLDA3Q9Y5J5 127 aa5.35□□□□□ -1.55
COL28A1-202ENST00000430711 TLN2Q9Y4G6 2542 aa5.34□□□□□ -1.55
COL28A1-202ENST00000430711 MYMXA0A1B0GTQ4 84 aa5.34□□□□□ -1.55
COL28A1-202ENST00000430711 C9orf139Q6ZV77 190 aa5.34□□□□□ -1.55
COL28A1-202ENST00000430711 SPAG8Q99932 426 aaPredicted RBP5.34□□□□□ -1.55
COL28A1-202ENST00000430711 TP53TG1Q9Y2A0 90 aa5.34□□□□□ -1.55
COL28A1-202ENST00000430711 TSSC4Q9Y5U2 329 aaPredicted RBP5.34□□□□□ -1.55
COL28A1-202ENST00000430711 IGHV3-64A0A075B6Q5 118 aa5.34□□□□□ -1.56
COL28A1-202ENST00000430711 H7C1H1 209 aa5.34□□□□□ -1.56
COL28A1-202ENST00000430711 ASIPP42127 132 aa5.34□□□□□ -1.56
COL28A1-202ENST00000430711 FAM74A4Q5TZK3 123 aa5.34□□□□□ -1.56
COL28A1-202ENST00000430711 FOXI2Q6ZQN5 318 aa5.34□□□□□ -1.56
COL28A1-202ENST00000430711 MRPL53Q96EL3 112 aaKnown RBP5.34□□□□□ -1.56
COL28A1-202ENST00000430711 DPH3P1Q9H4G8 78 aa5.34□□□□□ -1.56
COL28A1-202ENST00000430711 NACAE9PAV3 2078 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 ZNF688P0C7X2 276 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 RBMY1A1P0DJD3 496 aaKnown RBP5.33□□□□□ -1.56
COL28A1-202ENST00000430711 RBMY1CP0DJD4 496 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 P0DMU3 169 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 FAM231AP0DMU4 169 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 FAM231CP0DMU5 169 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 PROK1P58294 105 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 RBMY1FQ15415 496 aaKnown RBP5.33□□□□□ -1.56
COL28A1-202ENST00000430711 RRN3P1Q2M238 152 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 CLEC2AQ6UVW9 174 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 OR5A1Q8NGJ0 315 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 DCANP1Q8TF63 244 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 MRAP2Q96G30 205 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 AMELXQ99217 191 aa5.33□□□□□ -1.56
COL28A1-202ENST00000430711 TRAV21A0A0B4J279 112 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 LINC01549A6NIU2 74 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 IGIPA6NJ69 53 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 ZNF815PA8K554 130 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 OR11H12B2RN74 326 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 RAB9AP51151 201 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 SMAGPQ0VAQ4 97 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 C18orf65Q6ZTR6 163 aa5.32□□□□□ -1.56
COL28A1-202ENST00000430711 SMIM15Q7Z3B0 74 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms