RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FOXA3P55318 350 aaPredicted RBP8.64□□□□□ -1.03
USP40-205ENST00000430158 UQCC3Q6UW78 93 aa8.64□□□□□ -1.03
USP40-205ENST00000430158 ZFP82Q8N141 532 aa8.64□□□□□ -1.03
USP40-205ENST00000430158 LINC00476Q8WZB0 136 aa8.64□□□□□ -1.03
USP40-205ENST00000430158 CNFNQ9BYD5 112 aa8.64□□□□□ -1.03
USP40-205ENST00000430158 PRO0255Q9UI72 69 aa8.64□□□□□ -1.03
USP40-205ENST00000430158 V9GYV3 84 aa8.64□□□□□ -1.03
USP40-205ENST00000430158 A0A0J9YY99 117 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 A8MWV9 139 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 GATCO43716 136 aaKnown RBP8.63□□□□□ -1.03
USP40-205ENST00000430158 CIDEAO60543 219 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 ADCYAP1P18509 176 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 LINC00315P59091 139 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 WDR73Q6P4I2 378 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 LYZL1Q6UWQ5 148 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 ZFP2Q6ZN57 461 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 FER1L6-AS1Q8NA97 138 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 C15orf53Q8NAA6 179 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 MSRB1Q9NZV6 116 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 HHLA3Q9XRX5 114 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 KIF25-AS1Q9Y6Z4 181 aa8.63□□□□□ -1.03
USP40-205ENST00000430158 A0A1W2PPQ1 181 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 TMEM218A2RU14 115 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 XKRY2A2RUG3 117 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 M0R381 172 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 ERVFC1-1P60608 527 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 SLAQ13239 276 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 LGALS9CQ6DKI2 356 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 COMMD7Q86VX2 200 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 SYT8Q8NBV8 401 aa8.62□□□□□ -1.03
USP40-205ENST00000430158 A0A096LPF7 62 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 IGHV3-73A0A0B4J1V6 119 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 TRGV4A0A0C4DH28 118 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 A8MWL6 223 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 F2Z2F3 143 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 PAX4O43316 350 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 ADIRFQ15847 76 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 SLC25A29Q8N8R3 303 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 TSKUQ8WUA8 353 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 Q9UF83 564 aa8.61□□□□□ -1.03
USP40-205ENST00000430158 A0A087WWL8 130 aa8.6□□□□□ -1.03
USP40-205ENST00000430158 TRBV6-4A0A1B0GX49 114 aa8.6□□□□□ -1.03
USP40-205ENST00000430158 FAM231BA6NCW3 169 aa8.6□□□□□ -1.03
USP40-205ENST00000430158 CACNG7P62955 275 aa8.6□□□□□ -1.03
USP40-205ENST00000430158 OR10G8Q8NGN5 311 aa8.6□□□□□ -1.03
USP40-205ENST00000430158 GFRA4Q9GZZ7 299 aa8.6□□□□□ -1.03
USP40-205ENST00000430158 LOC100131303A0A0U1RQF7 123 aa8.59□□□□□ -1.03
USP40-205ENST00000430158 NUDT3O95989 172 aa8.59□□□□□ -1.03
USP40-205ENST00000430158 LINC00694P0DN24 101 aa8.59□□□□□ -1.03
USP40-205ENST00000430158 C10orf91Q5T1B1 145 aa8.59□□□□□ -1.03
USP40-205ENST00000430158 SPANXN1Q5VSR9 72 aa8.59□□□□□ -1.03
USP40-205ENST00000430158 C14orf178Q8N769 122 aaPredicted RBP8.59□□□□□ -1.03
USP40-205ENST00000430158 SMIM27A0A1W2PRY6 76 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 K7EQD1 137 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 RHODO00212 210 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 NTF3P20783 257 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 ESRGQ1W209 222 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 C15orf54Q8N8G6 183 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 TPPP3Q9BW30 176 aa8.58□□□□□ -1.04
USP40-205ENST00000430158 HIGD1CA8MV81 97 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 GYPEP15421 78 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 SSTP61278 116 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 PNRC1Q12796 327 aaPredicted RBP8.57□□□□□ -1.04
USP40-205ENST00000430158 RNF212Q495C1 297 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 PGLYRP4Q96LB8 373 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 SEC11CQ9BY50 192 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 LINC00588Q9Y4M8 146 aa8.57□□□□□ -1.04
USP40-205ENST00000430158 A6NJY4 79 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 LY6G6CO95867 125 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 P0DMU3 169 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 FAM231AP0DMU4 169 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 FAM231CP0DMU5 169 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 EVI2AP22794 236 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 RHOHQ15669 191 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 MRPL23Q16540 153 aaKnown RBP8.56□□□□□ -1.04
USP40-205ENST00000430158 FAM74A4Q5TZK3 123 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 NUP35Q8NFH5 326 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 ICOSQ9Y6W8 199 aa8.56□□□□□ -1.04
USP40-205ENST00000430158 RAB4BP61018 213 aa8.55□□□□□ -1.04
USP40-205ENST00000430158 AP1S3Q96PC3 154 aa8.55□□□□□ -1.04
USP40-205ENST00000430158 KRTAP4-7Q9BYR0 210 aa8.55□□□□□ -1.04
USP40-205ENST00000430158 CARHSP1Q9Y2V2 147 aaKnown RBP8.55□□□□□ -1.04
USP40-205ENST00000430158 F8W036 122 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 TIRAPP58753 221 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 TWIST1Q15672 202 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 LYPD5Q6UWN5 251 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 ZNRF2Q8NHG8 242 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 PRADC1Q9BSG0 188 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 DNAH10Q8IVF4 4471 aa8.54□□□□□ -1.04
USP40-205ENST00000430158 TRBV10-1A0A0K0K1A3 114 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 A0A1B0GUT8 65 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 M0QY20 66 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 PPP1R2P9O14990 202 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 TRGC1P0CF51 173 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 FAM3BP58499 235 aaPredicted RBP8.53□□□□□ -1.04
USP40-205ENST00000430158 NEGR1Q7Z3B1 354 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 UPK3BQ9BT76 320 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 DPH3P1Q9H4G8 78 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 NAT8BQ9UHF3 227 aa8.53□□□□□ -1.04
USP40-205ENST00000430158 MRPS16Q9Y3D3 137 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms