RNA–Protein interactions for RNA: ENST00000429456.1

LINC01238-203, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 2,170 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-203ENST00000429456 WFDC2Q14508 124 aa8.57□□□□□ -1.04
LINC01238-203ENST00000429456 PAPPA-AS1Q5QFB9 102 aa8.57□□□□□ -1.04
LINC01238-203ENST00000429456 MORN3Q6PF18 240 aaPredicted RBP8.57□□□□□ -1.04
LINC01238-203ENST00000429456 TMEM141Q96I45 108 aa8.57□□□□□ -1.04
LINC01238-203ENST00000429456 C9orf85Q96MD7 179 aa8.57□□□□□ -1.04
LINC01238-203ENST00000429456 ODF3Q96PU9 254 aa8.57□□□□□ -1.04
LINC01238-203ENST00000429456 SPANXB1Q9NS25 103 aaPredicted RBP8.57□□□□□ -1.04
LINC01238-203ENST00000429456 TRBV6-5A0A0K0K1A5 114 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 H3BMG7 143 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 PSMB8P28062 276 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 PMVKQ15126 192 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 TIMM17AQ99595 171 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 IGHV3-16A0A0C4DH30 117 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 TRBV27A0A0K0K1C4 114 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 RPL39P62891 51 aaKnown RBP8.56□□□□□ -1.04
LINC01238-203ENST00000429456 CD300EQ496F6 205 aaPredicted RBP8.56□□□□□ -1.04
LINC01238-203ENST00000429456 AMTNQ6UX39 209 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 KIR2DL4Q99706 377 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 TNFRSF18Q9Y5U5 241 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 VPS13CQ709C8 3753 aa8.56□□□□□ -1.04
LINC01238-203ENST00000429456 SDHAF1A6NFY7 115 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 F5H697 171 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 SCGB1D4Q6XE38 83 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 KLHL30-AS1Q8NEE0 82 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 PRO0461Q9UI25 63 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 A0A0J9YX75 114 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 UBE2D1P51668 147 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 HERVK_113P61574 105 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 DEFB104AQ8WTQ1 72 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 FAM110AQ9BQ89 295 aa8.55□□□□□ -1.04
LINC01238-203ENST00000429456 B4DSR2 109 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 ZNF688P0C7X2 276 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 SCGB1A1P11684 91 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 GAGE13Q4V321 117 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 CHD8Q9HCK8 2581 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 EMP1P54849 157 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 SRSF9Q13242 221 aaKnown RBP eCLIP8.54□□□□□ -1.04
LINC01238-203ENST00000429456 MDFICQ9P1T7 246 aa8.54□□□□□ -1.04
LINC01238-203ENST00000429456 CELSR1Q9NYQ6 3014 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 NCOR2Q9Y618 2525 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 TRAV12-2A0A075B6T6 113 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 A0A0J9YY99 117 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 TMEM89A2RUT3 159 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 K7EQG2 157 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 ZNF876PQ49A33 203 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 C10orf99Q6UWK7 81 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 SYT8Q8NBV8 401 aa8.53□□□□□ -1.04
LINC01238-203ENST00000429456 M0QY20 66 aa8.52□□□□□ -1.04
LINC01238-203ENST00000429456 IGHV4-59P01825 116 aa8.52□□□□□ -1.04
LINC01238-203ENST00000429456 SNRPD3P62318 126 aaKnown RBP8.52□□□□□ -1.04
LINC01238-203ENST00000429456 FAM74A4Q5TZK3 123 aa8.52□□□□□ -1.04
LINC01238-203ENST00000429456 SH2D6Q7Z4S9 175 aa8.52□□□□□ -1.04
LINC01238-203ENST00000429456 Q8N1Y9 231 aa8.52□□□□□ -1.04
LINC01238-203ENST00000429456 ZNRF2Q8NHG8 242 aa8.52□□□□□ -1.04
LINC01238-203ENST00000429456 IGHV1OR15-1A0A075B7D0 117 aa8.52□□□□□ -1.05
LINC01238-203ENST00000429456 GATA3P23771 443 aa8.52□□□□□ -1.05
LINC01238-203ENST00000429456 TSPEAR-AS2P59090 65 aa8.52□□□□□ -1.05
LINC01238-203ENST00000429456 DEFB112Q30KQ8 113 aa8.52□□□□□ -1.05
LINC01238-203ENST00000429456 ETDBQ3ZM63 59 aa8.52□□□□□ -1.05
LINC01238-203ENST00000429456 MRPL16Q9NX20 251 aaKnown RBP8.52□□□□□ -1.05
LINC01238-203ENST00000429456 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.51□□□□□ -1.05
LINC01238-203ENST00000429456 J3QR89 54 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 IGKV3-20P01619 116 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 RHOHQ15669 191 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 ZNF56Q15929 161 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 NSUN5P1Q3KNT7 163 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 ZNF256Q9Y2P7 627 aaPredicted RBP8.51□□□□□ -1.05
LINC01238-203ENST00000429456 TSPAN13O95857 204 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 TMEM170BQ5T4T1 132 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 TRPT1Q86TN4 253 aaKnown RBP8.51□□□□□ -1.05
LINC01238-203ENST00000429456 NFE4Q86UQ8 179 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 MTURNQ8N3F0 131 aa8.51□□□□□ -1.05
LINC01238-203ENST00000429456 SPAG8Q99932 426 aaPredicted RBP8.51□□□□□ -1.05
LINC01238-203ENST00000429456 PIEZO1Q92508 2521 aa8.5□□□□□ -1.05
LINC01238-203ENST00000429456 SPINK13Q1W4C9 94 aa8.5□□□□□ -1.05
LINC01238-203ENST00000429456 RNF152Q8N8N0 203 aa8.5□□□□□ -1.05
LINC01238-203ENST00000429456 AMELXQ99217 191 aa8.5□□□□□ -1.05
LINC01238-203ENST00000429456 TSSC4Q9Y5U2 329 aaPredicted RBP8.5□□□□□ -1.05
LINC01238-203ENST00000429456 IGHV3-30P01768 117 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 P0DMU3 169 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 FAM231AP0DMU4 169 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 FAM231CP0DMU5 169 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 IGHV3-30-5P0DP03 117 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 UBE2D3P61077 147 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 UBE2D2P62837 147 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 NDUFA11Q86Y39 141 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 SLC25A29Q8N8R3 303 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 DLX4Q92988 240 aaPredicted RBP8.49□□□□□ -1.05
LINC01238-203ENST00000429456 CSPG4Q6UVK1 2322 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 SYNJ2BPP57105 145 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 DSCR9P59020 149 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 CFAP126Q5VTH2 177 aa8.49□□□□□ -1.05
LINC01238-203ENST00000429456 GAGE12HA6NDE8 117 aa8.48□□□□□ -1.05
LINC01238-203ENST00000429456 J3QQQ9 107 aa8.48□□□□□ -1.05
LINC01238-203ENST00000429456 APOMO95445 188 aa8.48□□□□□ -1.05
LINC01238-203ENST00000429456 SIGMAR1Q99720 223 aa8.48□□□□□ -1.05
LINC01238-203ENST00000429456 OPRPNQ99935 248 aaPredicted RBP8.48□□□□□ -1.05
LINC01238-203ENST00000429456 SPATA25Q9BR10 227 aa8.48□□□□□ -1.05
LINC01238-203ENST00000429456 TMEM223A0PJW6 202 aa8.48□□□□□ -1.05
LINC01238-203ENST00000429456 SMCPP49901 116 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms