RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TPT1P13693 172 aaKnown RBP9.59□□□□□ -0.87
SDC1-204ENST00000429035 UBE2G1P62253 170 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 KCNIP4Q6PIL6 250 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 KLK12Q9UKR0 248 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 PHLDA3Q9Y5J5 127 aa9.59□□□□□ -0.87
SDC1-204ENST00000429035 FAM74A7A6NL05 159 aa9.58□□□□□ -0.88
SDC1-204ENST00000429035 C1QBP02746 253 aa9.58□□□□□ -0.88
SDC1-204ENST00000429035 GIPP09681 153 aaPredicted RBP9.58□□□□□ -0.88
SDC1-204ENST00000429035 PIK3CD-AS1Q5SR53 167 aa9.58□□□□□ -0.88
SDC1-204ENST00000429035 UFSP1Q6NVU6 142 aa9.58□□□□□ -0.88
SDC1-204ENST00000429035 UBE2WQ96B02 151 aa9.58□□□□□ -0.88
SDC1-204ENST00000429035 DNAJC30Q96LL9 226 aa9.58□□□□□ -0.88
SDC1-204ENST00000429035 SRRM2Q9UQ35 2752 aaKnown RBP9.57□□□□□ -0.88
SDC1-204ENST00000429035 A0A087WX48 190 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 RNF222A6NCQ9 220 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 KRBOX1C9JBD0 128 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 PTTG1O95997 202 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 FAM162BQ5T6X4 162 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 NIT1Q86X76 327 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 HIST1H2BAQ96A08 127 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 COX11Q9Y6N1 276 aa9.57□□□□□ -0.88
SDC1-204ENST00000429035 MAP1LC3B2A6NCE7 125 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 SEC11BP0C7V7 166 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 AKR1C3P42330 323 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 CRIP1P50238 77 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 CST9LP1Q5W188 147 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 Q6ZSA8 131 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 SCXQ7RTU7 201 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 FMC1Q96HJ9 113 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 MAP1LC3BQ9GZQ8 125 aa9.56□□□□□ -0.88
SDC1-204ENST00000429035 RPL36AP83881 106 aaKnown RBP9.55□□□□□ -0.88
SDC1-204ENST00000429035 ZFP82Q8N141 532 aa9.55□□□□□ -0.88
SDC1-204ENST00000429035 RPL36ALQ969Q0 106 aaKnown RBP9.55□□□□□ -0.88
SDC1-204ENST00000429035 NKX6-2Q9C056 277 aaPredicted RBP9.55□□□□□ -0.88
SDC1-204ENST00000429035 ZNF56Q15929 161 aa9.54□□□□□ -0.88
SDC1-204ENST00000429035 Q8N976 141 aa9.54□□□□□ -0.88
SDC1-204ENST00000429035 STOML3Q8TAV4 291 aa9.54□□□□□ -0.88
SDC1-204ENST00000429035 SFRP2Q96HF1 295 aa9.54□□□□□ -0.88
SDC1-204ENST00000429035 BATF3Q9NR55 127 aa9.54□□□□□ -0.88
SDC1-204ENST00000429035 ZFP30Q9Y2G7 519 aa9.54□□□□□ -0.88
SDC1-204ENST00000429035 TMEM262E9PQX1 116 aa9.53□□□□□ -0.88
SDC1-204ENST00000429035 CRPP02741 224 aa9.53□□□□□ -0.88
SDC1-204ENST00000429035 ELOBQ15370 118 aa9.53□□□□□ -0.88
SDC1-204ENST00000429035 DNLZQ5SXM8 178 aa9.53□□□□□ -0.88
SDC1-204ENST00000429035 A0A1B0GV50 99 aa9.52□□□□□ -0.89
SDC1-204ENST00000429035 ARPC5O15511 151 aa9.52□□□□□ -0.89
SDC1-204ENST00000429035 LINC01559Q495D7 138 aa9.52□□□□□ -0.89
SDC1-204ENST00000429035 DEFB104AQ8WTQ1 72 aa9.52□□□□□ -0.89
SDC1-204ENST00000429035 C1orf43Q9BWL3 253 aa9.52□□□□□ -0.89
SDC1-204ENST00000429035 TRBV10-1A0A0K0K1A3 114 aa9.51□□□□□ -0.89
SDC1-204ENST00000429035 HLA-DQA1P01909 254 aa9.51□□□□□ -0.89
SDC1-204ENST00000429035 RPL19P84098 196 aaKnown RBP9.51□□□□□ -0.89
SDC1-204ENST00000429035 ZNF674Q2M3X9 581 aa9.51□□□□□ -0.89
SDC1-204ENST00000429035 C15orf54Q8N8G6 183 aa9.51□□□□□ -0.89
SDC1-204ENST00000429035 CHCHD7Q9BUK0 85 aa9.51□□□□□ -0.89
SDC1-204ENST00000429035 TRBV7-3A0A075B6L6 115 aa9.5□□□□□ -0.89
SDC1-204ENST00000429035 LTAP01374 205 aa9.5□□□□□ -0.89
SDC1-204ENST00000429035 UBE2D3P61077 147 aa9.5□□□□□ -0.89
SDC1-204ENST00000429035 UBE2D2P62837 147 aa9.5□□□□□ -0.89
SDC1-204ENST00000429035 MUC21A0A0G2JKD1 596 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 MUC21A0A140T8X8 626 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 PAGE4O60829 102 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 ANGP03950 147 aaKnown RBP9.49□□□□□ -0.89
SDC1-204ENST00000429035 FHITP49789 147 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 SSTP61278 116 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 Q0VG73 95 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 C14orf177Q52M58 125 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 MPV17L2Q567V2 206 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 COX8CQ7Z4L0 72 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 OR10AG1Q8NH19 301 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 CHCHD5Q9BSY4 110 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 CHAC1Q9BUX1 264 aa9.49□□□□□ -0.89
SDC1-204ENST00000429035 SCO2A0A1W2PP80 73 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 KRTAP29-1A8MX34 341 aaPredicted RBP9.48□□□□□ -0.89
SDC1-204ENST00000429035 PFDN1O60925 122 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 PRR27Q6MZM9 219 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 CLPSL2Q6UWE3 100 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.48□□□□□ -0.89
SDC1-204ENST00000429035 NEXN-AS1Q8NBZ9 246 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 FAM213BQ8TBF2 198 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 CIRBP-AS1Q8TBR5 109 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 TCEAL7Q9BRU2 100 aa9.48□□□□□ -0.89
SDC1-204ENST00000429035 TRBV6-8A0A0A6YYG3 113 aa9.47□□□□□ -0.89
SDC1-204ENST00000429035 TRBV6-1A0A0K0K1D8 114 aa9.47□□□□□ -0.89
SDC1-204ENST00000429035 F5H697 171 aa9.47□□□□□ -0.89
SDC1-204ENST00000429035 IGLV2-8P01709 118 aa9.47□□□□□ -0.89
SDC1-204ENST00000429035 SPANXN1Q5VSR9 72 aa9.47□□□□□ -0.89
SDC1-204ENST00000429035 ZNF471Q9BX82 626 aaPredicted RBP9.47□□□□□ -0.89
SDC1-204ENST00000429035 G3V3Q6 166 aa9.46□□□□□ -0.9
SDC1-204ENST00000429035 SMLR1H3BR10 107 aa9.46□□□□□ -0.9
SDC1-204ENST00000429035 RAB4BP61018 213 aa9.46□□□□□ -0.9
SDC1-204ENST00000429035 ATRAIDQ6UW56 229 aa9.46□□□□□ -0.9
SDC1-204ENST00000429035 CYTL1Q9NRR1 136 aa9.46□□□□□ -0.9
SDC1-204ENST00000429035 USP17L23D6RBM5 183 aa9.45□□□□□ -0.9
SDC1-204ENST00000429035 SMIM17P0DL12 118 aa9.45□□□□□ -0.9
SDC1-204ENST00000429035 ENHOQ6UWT2 76 aa9.45□□□□□ -0.9
SDC1-204ENST00000429035 BAGE2Q86Y30 109 aa9.45□□□□□ -0.9
SDC1-204ENST00000429035 OR10G8Q8NGN5 311 aa9.45□□□□□ -0.9
SDC1-204ENST00000429035 SFT2D1Q8WV19 159 aa9.45□□□□□ -0.9
SDC1-204ENST00000429035 MGPP08493 103 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms