RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 IL17DQ8TAD2 202 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 SPXQ9BT56 116 aa8.13□□□□□ -1.11
LINC00539-201ENST00000411525 M0R2P5 195 aa8.12□□□□□ -1.11
LINC00539-201ENST00000411525 MRPL51Q4U2R6 128 aaKnown RBP8.12□□□□□ -1.11
LINC00539-201ENST00000411525 PIK3CD-AS1Q5SR53 167 aa8.12□□□□□ -1.11
LINC00539-201ENST00000411525 PTH2Q96A98 100 aa8.12□□□□□ -1.11
LINC00539-201ENST00000411525 RNF185Q96GF1 192 aa8.12□□□□□ -1.11
LINC00539-201ENST00000411525 DPH3P1Q9H4G8 78 aa8.12□□□□□ -1.11
LINC00539-201ENST00000411525 MUC4Q99102 2169 aa8.12□□□□□ -1.11
LINC00539-201ENST00000411525 LCE6AA0A183 80 aa8.11□□□□□ -1.11
LINC00539-201ENST00000411525 SMIM17P0DL12 118 aa8.11□□□□□ -1.11
LINC00539-201ENST00000411525 DEFB135Q30KP9 77 aa8.11□□□□□ -1.11
LINC00539-201ENST00000411525 ZNF876PQ49A33 203 aa8.11□□□□□ -1.11
LINC00539-201ENST00000411525 SMIM9A6NGZ8 99 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 S100A6P06703 90 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 MGPP08493 103 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 RAB4AP20338 218 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 Q6ZWC4 215 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 ORMDL3Q8N138 153 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 C14orf178Q8N769 122 aaPredicted RBP8.1□□□□□ -1.11
LINC00539-201ENST00000411525 TM2D3Q9BRN9 247 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 ALKBH7Q9BT30 221 aaPredicted RBP8.1□□□□□ -1.11
LINC00539-201ENST00000411525 NDUFAF3Q9BU61 184 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 X6R8D5 127 aa8.1□□□□□ -1.11
LINC00539-201ENST00000411525 PLAC8L1A1L4L8 177 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 A8MWV9 139 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 D6R8Y8 96 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 NDUFA6P56556 154 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 DAZ2Q13117 558 aaKnown RBP8.09□□□□□ -1.11
LINC00539-201ENST00000411525 OR10J3Q5JRS4 329 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 CFAP161Q6P656 301 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 JPT2Q9H910 190 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 MRPL16Q9NX20 251 aaKnown RBP8.09□□□□□ -1.11
LINC00539-201ENST00000411525 KIF25-AS1Q9Y6Z4 181 aa8.09□□□□□ -1.11
LINC00539-201ENST00000411525 CSMD3Q7Z407 3707 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 A0A087WWL8 130 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 TRGV1A0A0A0MS02 117 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 SMKR1H3BMG3 65 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 NCR2O95944 276 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 PPBPP02775 128 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 CKS2P33552 79 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 Q0VG73 95 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 COA6Q5JTJ3 125 aaKnown RBP8.08□□□□□ -1.12
LINC00539-201ENST00000411525 POM121L12Q8N7R1 296 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 OR11H2Q8NH07 326 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 C18orf32Q8TCD1 76 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 RNF183Q96D59 192 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 MRAP2Q96G30 205 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 LYSTQ99698 3801 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 SPATA25Q9BR10 227 aa8.08□□□□□ -1.12
LINC00539-201ENST00000411525 CRYGDP07320 174 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 LINC00315P59091 139 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 LGALS9BQ3B8N2 356 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 FAM74A4Q5TZK3 123 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 RASL10AQ92737 203 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 PRELID3AQ96N28 172 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 OVOL2Q9BRP0 275 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 SAMD10Q9BYL1 202 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 EDA2RQ9HAV5 297 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 NOP10Q9NPE3 64 aaKnown RBP8.07□□□□□ -1.12
LINC00539-201ENST00000411525 LAMTOR2Q9Y2Q5 125 aa8.07□□□□□ -1.12
LINC00539-201ENST00000411525 HUWE1Q7Z6Z7 4374 aaKnown RBP8.06□□□□□ -1.12
LINC00539-201ENST00000411525 TRAV26-2A0A0B4J265 109 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 C5orf52A6NGY3 159 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 RHODO00212 210 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 NPYP01303 97 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 MIFP14174 115 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 ZNF56Q15929 161 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 IQCJQ1A5X6 159 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 CFAP126Q5VTH2 177 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 ZFAND6Q6FIF0 208 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 Q6ZTI0 123 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 BAGE3Q86Y29 109 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 TP53TG1Q9Y2A0 90 aa8.06□□□□□ -1.12
LINC00539-201ENST00000411525 RS1O15537 224 aa8.05□□□□□ -1.12
LINC00539-201ENST00000411525 GAS8-AS1O95177 125 aa8.05□□□□□ -1.12
LINC00539-201ENST00000411525 EMP1P54849 157 aa8.05□□□□□ -1.12
LINC00539-201ENST00000411525 SNRPEP62304 92 aaKnown RBP8.05□□□□□ -1.12
LINC00539-201ENST00000411525 SUMO4Q6EEV6 95 aa8.05□□□□□ -1.12
LINC00539-201ENST00000411525 UFSP1Q6NVU6 142 aa8.05□□□□□ -1.12
LINC00539-201ENST00000411525 NRACQ8N912 160 aa8.05□□□□□ -1.12
LINC00539-201ENST00000411525 RYR2Q92736 4967 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 TRAV4A0A0B4J268 109 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 IGHV4-28A0A0C4DH34 117 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 F5H697 171 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 SERF1AO75920 110 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 TNFRSF6BO95407 300 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 GATA1P15976 413 aaPredicted RBP8.04□□□□□ -1.12
LINC00539-201ENST00000411525 HOXA5P20719 270 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 LINC00310P59036 64 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 Q8NAQ8 132 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 MAP1LC3AQ9H492 121 aa8.04□□□□□ -1.12
LINC00539-201ENST00000411525 DYNC2H1Q8NCM8 4307 aaKnown RBP8.04□□□□□ -1.12
LINC00539-201ENST00000411525 GAGE12BA1L429 117 aa8.03□□□□□ -1.12
LINC00539-201ENST00000411525 GAGE7O76087 117 aa8.03□□□□□ -1.12
LINC00539-201ENST00000411525 PPP1R17O96001 155 aa8.03□□□□□ -1.12
LINC00539-201ENST00000411525 GAGE12FP0CL80 117 aa8.03□□□□□ -1.12
LINC00539-201ENST00000411525 GAGE12GP0CL81 117 aa8.03□□□□□ -1.12
LINC00539-201ENST00000411525 GAGE12IP0CL82 117 aa8.03□□□□□ -1.12
LINC00539-201ENST00000411525 ZFP2Q6ZN57 461 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms