RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 PGLYRP4Q96LB8 373 aa20.53■□□□□ 0.88
USP42-202ENST00000404008 MSRB1Q9NZV6 116 aa20.53■□□□□ 0.88
USP42-202ENST00000404008 A0A087WWL8 130 aa20.52■□□□□ 0.88
USP42-202ENST00000404008 A0A0J9YY99 117 aa20.52■□□□□ 0.88
USP42-202ENST00000404008 CRYGDP07320 174 aa20.52■□□□□ 0.88
USP42-202ENST00000404008 CARHSP1Q9Y2V2 147 aaKnown RBP20.52■□□□□ 0.88
USP42-202ENST00000404008 H3BNG1 76 aa20.51■□□□□ 0.87
USP42-202ENST00000404008 RHODO00212 210 aa20.51■□□□□ 0.87
USP42-202ENST00000404008 PPP1R2P9O14990 202 aa20.51■□□□□ 0.87
USP42-202ENST00000404008 GATA1P15976 413 aaPredicted RBP20.51■□□□□ 0.87
USP42-202ENST00000404008 NTF3P20783 257 aa20.51■□□□□ 0.87
USP42-202ENST00000404008 FAM74A4Q5TZK3 123 aa20.51■□□□□ 0.87
USP42-202ENST00000404008 AP1S3Q96PC3 154 aa20.51■□□□□ 0.87
USP42-202ENST00000404008 SMIM27A0A1W2PRY6 76 aa20.5■□□□□ 0.87
USP42-202ENST00000404008 C15orf53Q8NAA6 179 aa20.5■□□□□ 0.87
USP42-202ENST00000404008 PAX4O43316 350 aa20.49■□□□□ 0.87
USP42-202ENST00000404008 MT-ND4LP03901 98 aa20.49■□□□□ 0.87
USP42-202ENST00000404008 ANAPC16Q96DE5 110 aa20.49■□□□□ 0.87
USP42-202ENST00000404008 NAT8BQ9UHF3 227 aa20.49■□□□□ 0.87
USP42-202ENST00000404008 TWIST1Q15672 202 aa20.48■□□□□ 0.87
USP42-202ENST00000404008 C14orf178Q8N769 122 aaPredicted RBP20.48■□□□□ 0.87
USP42-202ENST00000404008 NUP35Q8NFH5 326 aa20.48■□□□□ 0.87
USP42-202ENST00000404008 Q6ZSN1 163 aa20.47■□□□□ 0.87
USP42-202ENST00000404008 KIF25-AS1Q9Y6Z4 181 aa20.47■□□□□ 0.87
USP42-202ENST00000404008 SLC7A5P1Q8MH63 180 aa20.46■□□□□ 0.87
USP42-202ENST00000404008 SLC25A29Q8N8R3 303 aa20.46■□□□□ 0.87
USP42-202ENST00000404008 BORCS7Q96B45 105 aa20.46■□□□□ 0.87
USP42-202ENST00000404008 TRBV6-4A0A1B0GX49 114 aa20.46■□□□□ 0.87
USP42-202ENST00000404008 TRGC1P0CF51 173 aa20.46■□□□□ 0.87
USP42-202ENST00000404008 A0A1B0GUT8 65 aa20.45■□□□□ 0.86
USP42-202ENST00000404008 NUDT3O95989 172 aa20.45■□□□□ 0.86
USP42-202ENST00000404008 SMIM17P0DL12 118 aa20.44■□□□□ 0.86
USP42-202ENST00000404008 EVI2AP22794 236 aa20.43■□□□□ 0.86
USP42-202ENST00000404008 LINC00315P59091 139 aa20.42■□□□□ 0.86
USP42-202ENST00000404008 RHOHQ15669 191 aa20.42■□□□□ 0.86
USP42-202ENST00000404008 NDUFA5Q16718 116 aa20.42■□□□□ 0.86
USP42-202ENST00000404008 A0A096LPF7 62 aa20.41■□□□□ 0.86
USP42-202ENST00000404008 GYPEP15421 78 aa20.41■□□□□ 0.86
USP42-202ENST00000404008 RAB4BP61018 213 aa20.41■□□□□ 0.86
USP42-202ENST00000404008 ICOSQ9Y6W8 199 aa20.41■□□□□ 0.86
USP42-202ENST00000404008 LOC100131303A0A0U1RQF7 123 aa20.4■□□□□ 0.86
USP42-202ENST00000404008 K7EQD1 137 aa20.4■□□□□ 0.86
USP42-202ENST00000404008 ZNF56Q15929 161 aa20.4■□□□□ 0.86
USP42-202ENST00000404008 PRADC1Q9BSG0 188 aa20.4■□□□□ 0.86
USP42-202ENST00000404008 ALMS1Q8TCU4 4167 aa20.39■□□□□ 0.86
USP42-202ENST00000404008 CLRN3Q8NCR9 226 aa20.39■□□□□ 0.85
USP42-202ENST00000404008 CTDSP1Q9GZU7 261 aa20.39■□□□□ 0.85
USP42-202ENST00000404008 DPH3P1Q9H4G8 78 aa20.39■□□□□ 0.85
USP42-202ENST00000404008 APOC3P02656 99 aa20.38■□□□□ 0.85
USP42-202ENST00000404008 RIGQ13278 110 aa20.38■□□□□ 0.85
USP42-202ENST00000404008 MRPL23Q16540 153 aaKnown RBP20.37■□□□□ 0.85
USP42-202ENST00000404008 SMIM15Q7Z3B0 74 aa20.37■□□□□ 0.85
USP42-202ENST00000404008 C7orf77A4D0Y5 90 aa20.36■□□□□ 0.85
USP42-202ENST00000404008 F5H697 171 aa20.36■□□□□ 0.85
USP42-202ENST00000404008 MGPP08493 103 aa20.36■□□□□ 0.85
USP42-202ENST00000404008 RHEBQ15382 184 aa20.36■□□□□ 0.85
USP42-202ENST00000404008 Q9UF83 564 aa20.35■□□□□ 0.85
USP42-202ENST00000404008 FAM3BP58499 235 aaPredicted RBP20.34■□□□□ 0.85
USP42-202ENST00000404008 SVBPQ8N300 66 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 A0A087WWC5 75 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 P0DMU3 169 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 FAM231AP0DMU4 169 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 FAM231CP0DMU5 169 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 SRIP30626 198 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 LGALS9CQ6DKI2 356 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 LINC00476Q8WZB0 136 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 IMMP2LQ96T52 175 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 TMEM242Q9NWH2 141 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 DNAH1Q9P2D7 4330 aa20.34■□□□□ 0.85
USP42-202ENST00000404008 KMT2CQ8NEZ4 4911 aaKnown RBP20.33■□□□□ 0.84
USP42-202ENST00000404008 TMEM191AQ9H0A3 160 aa20.33■□□□□ 0.84
USP42-202ENST00000404008 TRBV10-1A0A0K0K1A3 114 aa20.32■□□□□ 0.84
USP42-202ENST00000404008 A0A1B0GW15 77 aa20.32■□□□□ 0.84
USP42-202ENST00000404008 SUMO4Q6EEV6 95 aa20.32■□□□□ 0.84
USP42-202ENST00000404008 VPS13DQ5THJ4 4388 aa20.31■□□□□ 0.84
USP42-202ENST00000404008 SNAPINO95295 136 aa20.31■□□□□ 0.84
USP42-202ENST00000404008 MRPL54Q6P161 138 aaKnown RBP20.31■□□□□ 0.84
USP42-202ENST00000404008 NEGR1Q7Z3B1 354 aa20.31■□□□□ 0.84
USP42-202ENST00000404008 RPS10P5Q9NQ39 176 aa20.31■□□□□ 0.84
USP42-202ENST00000404008 A0A1B0GXF2 115 aa20.3■□□□□ 0.84
USP42-202ENST00000404008 LINC00694P0DN24 101 aa20.3■□□□□ 0.84
USP42-202ENST00000404008 GAGE12JA6NER3 117 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 M0QY20 66 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 CAMPP49913 170 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 GAGE1Q13065 139 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 GAGE4Q13068 117 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 GAGE5Q13069 117 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 GAGE13Q4V321 117 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 SH2D6Q7Z4S9 175 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 ATP5L2Q7Z4Y8 100 aa20.29■□□□□ 0.84
USP42-202ENST00000404008 LCE6AA0A183 80 aa20.28■□□□□ 0.84
USP42-202ENST00000404008 LY6G6CO95867 125 aa20.28■□□□□ 0.84
USP42-202ENST00000404008 HBBP68871 147 aa20.28■□□□□ 0.84
USP42-202ENST00000404008 ESRGQ1W209 222 aa20.28■□□□□ 0.84
USP42-202ENST00000404008 H7C1H1 209 aa20.27■□□□□ 0.84
USP42-202ENST00000404008 CCL18P55774 89 aa20.27■□□□□ 0.84
USP42-202ENST00000404008 KCNIP4Q6PIL6 250 aa20.27■□□□□ 0.84
USP42-202ENST00000404008 NEXN-AS1Q8NBZ9 246 aa20.26■□□□□ 0.83
USP42-202ENST00000404008 BTF3L4Q96K17 158 aa20.26■□□□□ 0.83
USP42-202ENST00000404008 LINC00588Q9Y4M8 146 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms