RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 CKS1BP61024 79 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 Q8N2B8 174 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 LGALS9O00182 355 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 PSMG4Q5JS54 123 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 WFDC11Q8NEX6 87 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 MUC4Q99102 2169 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 S100A4P26447 101 aaKnown RBP10.42□□□□□ -0.74
SNCA-204ENST00000394989 LGALS9BQ3B8N2 356 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 LGALS9CQ6DKI2 356 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 Q8N8P6 123 aa10.42□□□□□ -0.74
SNCA-204ENST00000394989 A0A1B0GV72 72 aa10.41□□□□□ -0.74
SNCA-204ENST00000394989 K7EQG2 157 aa10.41□□□□□ -0.74
SNCA-204ENST00000394989 DEFB136Q30KP8 78 aa10.41□□□□□ -0.74
SNCA-204ENST00000394989 OR9G4Q8NGQ1 327 aa10.41□□□□□ -0.74
SNCA-204ENST00000394989 SPAG8Q99932 426 aaPredicted RBP10.41□□□□□ -0.74
SNCA-204ENST00000394989 CHAC1Q9BUX1 264 aa10.41□□□□□ -0.74
SNCA-204ENST00000394989 PHLDA3Q9Y5J5 127 aa10.41□□□□□ -0.74
SNCA-204ENST00000394989 MED14OSP0DP75 135 aa10.4□□□□□ -0.74
SNCA-204ENST00000394989 FOXC2Q99958 501 aa10.4□□□□□ -0.74
SNCA-204ENST00000394989 KMT2BQ9UMN6 2715 aaPredicted RBP10.4□□□□□ -0.74
SNCA-204ENST00000394989 CD300EQ496F6 205 aaPredicted RBP10.4□□□□□ -0.74
SNCA-204ENST00000394989 ZC2HC1BQ5TFG8 222 aa10.4□□□□□ -0.74
SNCA-204ENST00000394989 C14orf178Q8N769 122 aaPredicted RBP10.4□□□□□ -0.74
SNCA-204ENST00000394989 A0A0J9YX75 114 aa10.4□□□□□ -0.75
SNCA-204ENST00000394989 DEFB104AQ8WTQ1 72 aa10.4□□□□□ -0.75
SNCA-204ENST00000394989 TMEM158Q8WZ71 300 aa10.4□□□□□ -0.75
SNCA-204ENST00000394989 SONP18583 2426 aaKnown RBP10.4□□□□□ -0.75
SNCA-204ENST00000394989 CCDC168Q8NDH2 2452 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 TCTEX1D4Q5JR98 221 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 MRAP2Q96G30 205 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 C20orf78Q9BR46 151 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 ITPR2Q14571 2701 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 ANK3Q12955 4377 aaKnown RBP10.39□□□□□ -0.75
SNCA-204ENST00000394989 TRAV12-3A0A0B4J271 114 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 SLURP1P55000 103 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 ZNF479Q96JC4 524 aa10.39□□□□□ -0.75
SNCA-204ENST00000394989 TRBV25-1A0A075B6N4 114 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 IGKV3-20P01619 116 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 HIST2H2BDQ6DRA6 164 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 RASL10AQ92737 203 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 A0A1B0GWB2 263 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 NXPH4O95158 308 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 SNRPD3P62318 126 aaKnown RBP10.38□□□□□ -0.75
SNCA-204ENST00000394989 DPH3P1Q9H4G8 78 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 TRAV12-2A0A075B6T6 113 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 CRYBA4P53673 196 aa10.38□□□□□ -0.75
SNCA-204ENST00000394989 FAM159AQ6UWV7 190 aa10.37□□□□□ -0.75
SNCA-204ENST00000394989 RPL39LQ96EH5 51 aaKnown RBP10.37□□□□□ -0.75
SNCA-204ENST00000394989 SORL1Q92673 2214 aa10.37□□□□□ -0.75
SNCA-204ENST00000394989 SCGB2A2Q13296 93 aa10.37□□□□□ -0.75
SNCA-204ENST00000394989 ODF3Q96PU9 254 aa10.37□□□□□ -0.75
SNCA-204ENST00000394989 LAGE3Q14657 143 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 DUX3Q96PT4 197 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 HIST1H4GQ99525 98 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 KIF25-AS1Q9Y6Z4 181 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 J3QR89 54 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 LINC00315P59091 139 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 MAPKAPK5-AS1Q8N8E1 139 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 DPF1Q92782 380 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 SPANXB1Q9NS25 103 aaPredicted RBP10.36□□□□□ -0.75
SNCA-204ENST00000394989 HELZ2Q9BYK8 2649 aaKnown RBP10.36□□□□□ -0.75
SNCA-204ENST00000394989 SMIM17P0DL12 118 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 ODF1Q14990 250 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 SMIM2Q9BVW6 85 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 JPT2Q9H910 190 aa10.36□□□□□ -0.75
SNCA-204ENST00000394989 NIPBLQ6KC79 2804 aaeCLIP10.36□□□□□ -0.75
SNCA-204ENST00000394989 CD7P09564 240 aa10.35□□□□□ -0.75
SNCA-204ENST00000394989 SPINK13Q1W4C9 94 aa10.35□□□□□ -0.75
SNCA-204ENST00000394989 POM121L12Q8N7R1 296 aa10.35□□□□□ -0.75
SNCA-204ENST00000394989 OR11H1Q8NG94 326 aa10.35□□□□□ -0.75
SNCA-204ENST00000394989 ZNF418Q8TF45 676 aaPredicted RBP10.35□□□□□ -0.75
SNCA-204ENST00000394989 IGLL5B9A064 214 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 MGPP08493 103 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 SUMO2P61956 95 aaKnown RBP10.34□□□□□ -0.75
SNCA-204ENST00000394989 PTH2Q96A98 100 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 ZMAT4Q9H898 229 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 GAGE13Q4V321 117 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 GEMIN7Q9H840 131 aaKnown RBP10.34□□□□□ -0.75
SNCA-204ENST00000394989 MDFICQ9P1T7 246 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 CYSLTR1Q9Y271 337 aa10.34□□□□□ -0.75
SNCA-204ENST00000394989 LOC107984156A0A0G2JMH3 177 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 IGKCP01834 107 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 ARL17AQ8IVW1 177 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 C4orf3Q8WVX3 66 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 HHLA3Q9XRX5 114 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 IGHV3-16A0A0C4DH30 117 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 LINC01619G3V211 115 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 FOXI2Q6ZQN5 318 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 Q6ZSV7 163 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 CEND1Q8N111 149 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 SYT8Q8NBV8 401 aa10.33□□□□□ -0.76
SNCA-204ENST00000394989 MRPL35Q9NZE8 188 aaKnown RBP10.33□□□□□ -0.76
SNCA-204ENST00000394989 Q8N1Y9 231 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 ESM1Q9NQ30 184 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 DNAJC9-AS1A6NH13 148 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 KRTAP1-1Q07627 177 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 C9orf85Q96MD7 179 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 APOMO95445 188 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 C12orf74Q32Q52 190 aa10.32□□□□□ -0.76
SNCA-204ENST00000394989 TMEM86BQ8N661 226 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms