RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 IGHV4-38-2P0DP08 117 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 BRD3OSQ6XYD6 125 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 NRACQ8N912 160 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 OR11H6Q8NGC7 330 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 CD7P09564 240 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 IGHV4-31P0DP07 118 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 RPL7P18124 248 aaKnown RBP8.51□□□□□ -1.05
CUX1-204ENST00000393824 IL17RELQ6ZVW7 336 aa8.51□□□□□ -1.05
CUX1-204ENST00000393824 LOC107984156A0A0G2JMH3 177 aa8.5□□□□□ -1.05
CUX1-204ENST00000393824 SCGB2A1O75556 95 aa8.5□□□□□ -1.05
CUX1-204ENST00000393824 MFAP4P55083 255 aa8.5□□□□□ -1.05
CUX1-204ENST00000393824 TMEM78Q5T7P6 136 aa8.5□□□□□ -1.05
CUX1-204ENST00000393824 ARL17AQ8IVW1 177 aa8.5□□□□□ -1.05
CUX1-204ENST00000393824 A8MWV9 139 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 B4DSR2 109 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 TGFAP01135 160 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 Q8TAT8 98 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 SAA4P35542 130 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 GAGE2BQ13066 116 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 GAGE2EQ4V326 116 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 NPBQ8NG41 125 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 GAGE2DQ9UEU5 116 aa8.49□□□□□ -1.05
CUX1-204ENST00000393824 CSDC2Q9Y534 153 aaKnown RBP8.49□□□□□ -1.05
CUX1-204ENST00000393824 LINC01548A6NM66 108 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 CYSRT1A8MQ03 144 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 TCL1BO95988 128 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 IFITM1P13164 125 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 TTC32Q5I0X7 151 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 NEXN-AS1Q8NBZ9 246 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 KIR2DL4Q99706 377 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 TRAV25A0A0B4J276 109 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 TIMM23O14925 209 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 ASIPP42127 132 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 NDUFA11Q86Y39 141 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 LINC01356Q8N9X3 169 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 TMEM126AQ9H061 195 aa8.48□□□□□ -1.05
CUX1-204ENST00000393824 IGLV11-55A0A075B6I3 123 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 NBR2O15453 112 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 WIPF1O43516 503 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 PRADC1Q9BSG0 188 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 UBE2E1P51965 193 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 KRTAP1-1Q07627 177 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 SRSF9Q13242 221 aaKnown RBP eCLIP8.47□□□□□ -1.05
CUX1-204ENST00000393824 CFHR4Q92496 578 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 SMR3AQ99954 134 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 DPM3Q9P2X0 92 aa8.47□□□□□ -1.05
CUX1-204ENST00000393824 ZNF815PA8K554 130 aa8.46□□□□□ -1.05
CUX1-204ENST00000393824 TRGV3P03979 118 aa8.46□□□□□ -1.05
CUX1-204ENST00000393824 ANKRD29Q8N6D5 301 aa8.46□□□□□ -1.05
CUX1-204ENST00000393824 TOMM6Q96B49 74 aa8.46□□□□□ -1.05
CUX1-204ENST00000393824 TEP1Q99973 2627 aaKnown RBP8.46□□□□□ -1.06
CUX1-204ENST00000393824 MAST4O15021 2626 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 IGHV4-4A0A075B6R2 117 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 IGKV3D-20A0A0C4DH25 116 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 RBAKDNA6NC62 111 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 ORMDL2Q53FV1 153 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 Q6Q795 121 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 FAM159AQ6UWV7 190 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 SCGB1D4Q6XE38 83 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 FANCD2OSQ96PS1 177 aa8.46□□□□□ -1.06
CUX1-204ENST00000393824 A4D1N5 150 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 NPFFO15130 113 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 MEIG1Q5JSS6 88 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 SFTA2Q6UW10 78 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 PLEKHB2Q96CS7 222 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 SCGB3A1Q96QR1 104 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 SMIM2Q9BVW6 85 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 C21orf62Q9NYP8 219 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 SMAD5-AS1Q9Y6J3 95 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 NSD1Q96L73 2696 aaPredicted RBP8.45□□□□□ -1.06
CUX1-204ENST00000393824 ERCC8Q13216 396 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 C10orf126Q8N4M7 172 aa8.45□□□□□ -1.06
CUX1-204ENST00000393824 CITED2Q99967 270 aaPredicted RBP8.45□□□□□ -1.06
CUX1-204ENST00000393824 NIPBLQ6KC79 2804 aaeCLIP8.44□□□□□ -1.063e-10■■■■■ 76.4
CUX1-204ENST00000393824 TRAV26-2A0A0B4J265 109 aa8.44□□□□□ -1.06
CUX1-204ENST00000393824 IGHV1-69DA0A0B4J2H0 117 aa8.44□□□□□ -1.06
CUX1-204ENST00000393824 IGHV7-4-1A0A0J9YVY3 117 aa8.44□□□□□ -1.06
CUX1-204ENST00000393824 F8W735 103 aaPredicted RBP8.44□□□□□ -1.06
CUX1-204ENST00000393824 SNCGO76070 127 aa8.44□□□□□ -1.06
CUX1-204ENST00000393824 IGHV1-69P01742 117 aa8.44□□□□□ -1.06
CUX1-204ENST00000393824 SETD2Q9BYW2 2564 aaPredicted RBP8.44□□□□□ -1.06
CUX1-204ENST00000393824 F8P00451 2351 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 A0A0J9YY99 117 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 SCGB1C2P0DMR2 95 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 RASL10AQ92737 203 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 CFC1BP0CG36 223 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 CFC1P0CG37 223 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 HLA-DMBP28068 263 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 BAALCQ8WXS3 180 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 C11orf21Q9P2W6 132 aa8.43□□□□□ -1.06
CUX1-204ENST00000393824 HIVEP2P31629 2446 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 SMIM9A6NGZ8 99 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 H3BVH4 76 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 SLC25A20O43772 301 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 IGFL4Q6B9Z1 124 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 LINC01600Q96MT4 127 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 SLC50A1Q9BRV3 221 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 TRAV4A0A0B4J268 109 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 DNAJC30Q96LL9 226 aa8.42□□□□□ -1.06
CUX1-204ENST00000393824 IGHV3-30P01768 117 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms