RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 C10orf126Q8N4M7 172 aa7.46□□□□□ -1.21
COL17A1-203ENST00000393211 RNF152Q8N8N0 203 aa7.46□□□□□ -1.21
COL17A1-203ENST00000393211 KLHL30-AS1Q8NEE0 82 aa7.46□□□□□ -1.21
COL17A1-203ENST00000393211 IGHV3-16A0A0C4DH30 117 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 LOC107984156A0A0G2JMH3 177 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 A0A0J9YX75 114 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 F5H697 171 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 H3BUX3 64 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 J3QQQ9 107 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 LGALS3P17931 250 aaKnown RBP7.45□□□□□ -1.22
COL17A1-203ENST00000393211 PSMB2P49721 201 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 SMCPP49901 116 aaPredicted RBP7.45□□□□□ -1.22
COL17A1-203ENST00000393211 DEFB1P60022 68 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 BRD3OSQ6XYD6 125 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 TEN1Q86WV5 123 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 ARL17AQ8IVW1 177 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 MTURNQ8N3F0 131 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 PPDPFLQ8WWR9 84 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 MDFICQ9P1T7 246 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 MUC4Q99102 2169 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 IGHV3OR16-10A0A075B7F0 116 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 M0QY20 66 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 CFC1BP0CG36 223 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 CFC1P0CG37 223 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 CRYBA4P53673 196 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 TMEM170BQ5T4T1 132 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 C10orf105Q8TEF2 133 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 AMELXQ99217 191 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 EDA2RQ9HAV5 297 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 PRO1854Q9UHT4 67 aa7.45□□□□□ -1.22
COL17A1-203ENST00000393211 ZNF256Q9Y2P7 627 aaPredicted RBP7.45□□□□□ -1.22
COL17A1-203ENST00000393211 PIEZO1Q92508 2521 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 TRAV12-3A0A0B4J271 114 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 TMEM223A0PJW6 202 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 SNRPD3P62318 126 aaKnown RBP7.44□□□□□ -1.22
COL17A1-203ENST00000393211 RPL39P62891 51 aaKnown RBP7.44□□□□□ -1.22
COL17A1-203ENST00000393211 LY6EQ16553 131 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 CLEC2AQ6UVW9 174 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 ZNRF2Q8NHG8 242 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 ATMQ13315 3056 aa7.44□□□□□ -1.22
COL17A1-203ENST00000393211 IGHV1OR15-1A0A075B7D0 117 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 A0A087WWL8 130 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 A0A0B4J2C4 111 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 IGHV4-61A0A0C4DH41 118 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 A8MWV9 139 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 I3L3M4 83 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 IGHV4-38-2P0DP08 117 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 INSL3P51460 131 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 C20orf203Q8NBC4 194 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 JPT2Q9H910 190 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 TACC2O95359 2948 aa7.43□□□□□ -1.22
COL17A1-203ENST00000393211 IGKV3-7A0A075B6H7 116 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 TRGV11A0A075B6L2 103 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.42□□□□□ -1.22
COL17A1-203ENST00000393211 TCL1BO95988 128 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 P0DMU3 169 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 FAM231AP0DMU4 169 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 FAM231CP0DMU5 169 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 PSMB8P28062 276 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 TSPEAR-AS2P59090 65 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 BLCAPP62952 87 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 LINC01600Q96MT4 127 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 CDIP1Q9H305 208 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 PYGO1Q9Y3Y4 419 aa7.42□□□□□ -1.22
COL17A1-203ENST00000393211 HRNRQ86YZ3 2850 aaPredicted RBP7.42□□□□□ -1.22
COL17A1-203ENST00000393211 TMEM262E9PQX1 116 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 K7EQG2 157 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 GATA3P23771 443 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 ZNF56Q15929 161 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 Q6ZS46 218 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 RHODO00212 210 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 MSMBP08118 114 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 EMP1P54849 157 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 PIK3CD-AS1Q5SR53 167 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 Q8N1Y9 231 aa7.41□□□□□ -1.22
COL17A1-203ENST00000393211 ZNF418Q8TF45 676 aaPredicted RBP7.41□□□□□ -1.22
COL17A1-203ENST00000393211 DCHS2Q6V1P9 2916 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 C19orf84I3L1E1 186 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 IGHV3-33P01772 117 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 ZNF688P0C7X2 276 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 SCGB1C2P0DMR2 95 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 ZNF22P17026 224 aaPredicted RBP7.4□□□□□ -1.22
COL17A1-203ENST00000393211 SRD5A1P18405 259 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 CKS1BP61024 79 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 FAM74A4Q5TZK3 123 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 TMEM263Q8WUH6 116 aaKnown RBP7.4□□□□□ -1.22
COL17A1-203ENST00000393211 CARD19Q96LW7 228 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 ERG28Q9UKR5 140 aa7.4□□□□□ -1.22
COL17A1-203ENST00000393211 LRBAP50851 2863 aa7.4□□□□□ -1.23
COL17A1-203ENST00000393211 NCOR2Q9Y618 2525 aa7.39□□□□□ -1.23
COL17A1-203ENST00000393211 A4D1N5 150 aa7.39□□□□□ -1.23
COL17A1-203ENST00000393211 M0R2P5 195 aa7.39□□□□□ -1.23
COL17A1-203ENST00000393211 CCL19Q99731 98 aa7.39□□□□□ -1.23
COL17A1-203ENST00000393211 IGLV4-3A0A075B6K6 122 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 B4DSR2 109 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 SPINK8P0C7L1 97 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 DSCR9P59020 149 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 Q6ZUT4 128 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 PTH2Q96A98 100 aa7.38□□□□□ -1.23
COL17A1-203ENST00000393211 LAMA5O15230 3695 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms