RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SIGLEC1Q9BZZ2 1709 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 CSRP3P50461 194 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 OTOGLQ3ZCN5 2332 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 SPAARA0A1B0GVQ0 90 aa6.88□□□□□ -1.31
LIG3-202ENST00000378526 CELA3BP08861 270 aa6.87□□□□□ -1.31
LIG3-202ENST00000378526 LILRA6Q6PI73 481 aa6.87□□□□□ -1.31
LIG3-202ENST00000378526 DEFB131AP59861 70 aa6.87□□□□□ -1.31
LIG3-202ENST00000378526 Q6ZRM9 215 aa6.87□□□□□ -1.31
LIG3-202ENST00000378526 B9D2Q9BPU9 175 aa6.87□□□□□ -1.31
LIG3-202ENST00000378526 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.87□□□□□ -1.31
LIG3-202ENST00000378526 IGKV2-29A2NJV5 120 aaPredicted RBP6.87□□□□□ -1.31
LIG3-202ENST00000378526 FAM110DQ8TAY7 271 aaPredicted RBP6.87□□□□□ -1.31
LIG3-202ENST00000378526 IGKV1-12A0A0C4DH73 117 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 A0A0J9YXY3 114 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 IGKV1D-12P01611 117 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 Q6JHZ5 121 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 RNF185Q96GF1 192 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 KIAA1549LQ6ZVL6 1849 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 MDFICQ9P1T7 246 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 IGKV1-27A0A075B6S5 117 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 SIRPDQ9H106 197 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 WFDC10BQ8IUB3 73 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 RPS28P62857 69 aaKnown RBP6.86□□□□□ -1.31
LIG3-202ENST00000378526 IGFL4Q6B9Z1 124 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 RNASE6Q93091 150 aaKnown RBP6.86□□□□□ -1.31
LIG3-202ENST00000378526 IGF2BP2-AS1Q96M15 143 aa6.86□□□□□ -1.31
LIG3-202ENST00000378526 A0A0G2JRQ6 117 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 RNF144BQ7Z419 303 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 TMEM254Q8TBM7 123 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 Q9HAA7 133 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 IGHV4-59P01825 116 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 C5orf38Q86SI9 138 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 PRYO14603 147 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 NSUN5P1Q3KNT7 163 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 SPG11Q96JI7 2443 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 IGKV2D-24A0A075B6R9 120 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 MED14OSP0DP75 135 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 CLPSL2Q6UWE3 100 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 IGKV1-16P04430 117 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 K7EQD1 137 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 XCL2Q9UBD3 114 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 CELA1Q9UNI1 258 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 PAPPAQ13219 1627 aa6.85□□□□□ -1.31
LIG3-202ENST00000378526 LOC107984640A0A0U1RRK4 108 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 PSPNO60542 156 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 MIR7-3HGQ8N6C7 128 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 ZNF833PQ6ZTB9 187 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 CRYGDP07320 174 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 CTRLP40313 264 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 EBI3Q14213 229 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 IGHV1-46P01743 117 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 PRR20EP86478 221 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 PRR20CP86479 221 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 PRR20DP86480 221 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 PRR20BP86481 221 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 PRR20AP86496 221 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 CFHR3Q02985 330 aa6.84□□□□□ -1.31
LIG3-202ENST00000378526 NCR3O14931 201 aa6.84□□□□□ -1.32
LIG3-202ENST00000378526 ADAMTS7Q9UKP4 1686 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 PLA2G2FQ9BZM2 168 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 DIAPH2-AS1Q14236 149 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 ZNF491Q8N8L2 437 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 RPL39LQ96EH5 51 aaKnown RBP6.83□□□□□ -1.32
LIG3-202ENST00000378526 C9orf85Q96MD7 179 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 SPAG11AQ6PDA7 123 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 EFNA2O43921 213 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 ZFAND3Q9H8U3 227 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 SIP14410 1827 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 GLI3P10071 1580 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 IGHV1-18A0A0C4DH31 117 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 GATA3P23771 443 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 IGHV3-30-3P0DP02 117 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 CFAP126Q5VTH2 177 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 CD177Q8N6Q3 437 aa6.83□□□□□ -1.32
LIG3-202ENST00000378526 NUPR1O60356 82 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 LOXP28300 417 aaPredicted RBP6.82□□□□□ -1.32
LIG3-202ENST00000378526 C4orf51C9J302 202 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 XGP55808 180 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 OVOL3O00110 214 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 LINC01560Q8TB33 94 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 TRBV10-3A0A0K0K1G6 114 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 LINC00173Q6ZV60 143 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.82□□□□□ -1.32
LIG3-202ENST00000378526 PSPHP1O15172 72 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 WDR86Q86TI4 376 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 SLC22A18ASQ8N1D0 253 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 A0A0J9YXV3 536 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 TFF1P04155 84 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 APRG1Q8IVJ8 170 aa6.82□□□□□ -1.32
LIG3-202ENST00000378526 ZNF837Q96EG3 531 aaPredicted RBP6.81□□□□□ -1.32
LIG3-202ENST00000378526 C16orf74Q96GX8 76 aa6.81□□□□□ -1.32
LIG3-202ENST00000378526 FAM27E3Q08E93 113 aa6.81□□□□□ -1.32
LIG3-202ENST00000378526 H3BUA1 57 aa6.81□□□□□ -1.32
LIG3-202ENST00000378526 TRIAP1O43715 76 aa6.81□□□□□ -1.32
LIG3-202ENST00000378526 RSPO4Q2I0M5 234 aaPredicted RBP6.81□□□□□ -1.32
LIG3-202ENST00000378526 IGFBP6P24592 240 aaPredicted RBP6.81□□□□□ -1.32
LIG3-202ENST00000378526 J3QLI3 93 aa6.81□□□□□ -1.32
LIG3-202ENST00000378526 MRPS12O15235 138 aaKnown RBP6.81□□□□□ -1.32
LIG3-202ENST00000378526 SOSTDC1Q6X4U4 206 aa6.81□□□□□ -1.32
LIG3-202ENST00000378526 RFPL3SP0C7P2 107 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms