RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 TRAV41A0A0B4J266 112 aa10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 PSMB2P49721 201 aa10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 JPT2Q9H910 190 aa10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 C11orf86A6NJI1 115 aa10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 TSHBP01222 138 aa10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 RNASE3P12724 160 aaKnown RBP10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 LENEPQ9Y5L5 61 aa10.63□□□□□ -0.71
CLCNKA-202ENST00000375692 ABCA2Q9BZC7 2435 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 IGHV4-30-2A0A087WSY4 118 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 NPFFO15130 113 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 TSPAN13O95857 204 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 IGHV3-11P01762 117 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 WFDC12Q8WWY7 111 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 PTH2Q96A98 100 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 IGHV4-61A0A0C4DH41 118 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 NFE4Q86UQ8 179 aa10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 ZNF418Q8TF45 676 aaPredicted RBP10.62□□□□□ -0.71
CLCNKA-202ENST00000375692 SOCS3O14543 225 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 SRD5A1P18405 259 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 RPL39P62891 51 aaKnown RBP10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 CFAP126Q5VTH2 177 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 IGLV4-69A0A075B6H9 119 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 OVOL1O14753 267 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 UBE2D1P51668 147 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 FOXI1Q12951 378 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 DLX4Q92988 240 aaPredicted RBP10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 TP53TG1Q9Y2A0 90 aa10.61□□□□□ -0.71
CLCNKA-202ENST00000375692 CCDC168Q8NDH2 2452 aa10.6□□□□□ -0.71
CLCNKA-202ENST00000375692 ATP6V0BQ99437 205 aa10.6□□□□□ -0.71
CLCNKA-202ENST00000375692 HECTD1Q9ULT8 2610 aa10.6□□□□□ -0.71
CLCNKA-202ENST00000375692 Q6ZS46 218 aa10.6□□□□□ -0.71
CLCNKA-202ENST00000375692 SYT8Q8NBV8 401 aa10.6□□□□□ -0.71
CLCNKA-202ENST00000375692 C10orf105Q8TEF2 133 aa10.6□□□□□ -0.71
CLCNKA-202ENST00000375692 ITPR2Q14571 2701 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 A0A087WWL8 130 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 TGFAP01135 160 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 CD7P09564 240 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 LINC00315P59091 139 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 TMEM238LA0A1B0GVL6 79 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 A6NJY4 79 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 TSPEAR-AS2P59090 65 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 BRD3OSQ6XYD6 125 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 C1QTNF4Q9BXJ3 329 aa10.59□□□□□ -0.71
CLCNKA-202ENST00000375692 A0A0J9YY99 117 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 IGIPA6NJ69 53 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 C19orf54Q5BKX5 351 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 FAM19A4Q96LR4 140 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 KIF25-AS1Q9Y6Z4 181 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 FAM223BA6NKX1 122 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 EDN2P20800 178 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 FHL3Q13643 280 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 FAM223AQ8IWN6 122 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 MAPK1IP1LQ8NDC0 245 aa10.58□□□□□ -0.72
CLCNKA-202ENST00000375692 NDUFA11Q86Y39 141 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 PIMREGQ9BSJ6 248 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 CDIP1Q9H305 208 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 F5H697 171 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 TMEM170BQ5T4T1 132 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 SUMO4Q6EEV6 95 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 MOB4Q9Y3A3 225 aa10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.57□□□□□ -0.72
CLCNKA-202ENST00000375692 NDUFA4O00483 81 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 CKS1BP61024 79 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 UBE2D3P61077 147 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 UBE2D2P62837 147 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 LY6EQ16553 131 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 ZNRF2Q8NHG8 242 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 CSPG4Q6UVK1 2322 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 PRRC2AP48634 2157 aaKnown RBP10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 A0A1B0GV72 72 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 TCL1BO95988 128 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 CFC1BP0CG36 223 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 CFC1P0CG37 223 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 PMVKQ15126 192 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 CARD19Q96LW7 228 aa10.56□□□□□ -0.72
CLCNKA-202ENST00000375692 MED14OSP0DP75 135 aa10.55□□□□□ -0.72
CLCNKA-202ENST00000375692 POLR2KP53803 58 aaKnown RBP10.55□□□□□ -0.72
CLCNKA-202ENST00000375692 OPRPNQ99935 248 aaPredicted RBP10.55□□□□□ -0.72
CLCNKA-202ENST00000375692 RHPN1-AS1Q9BWJ2 59 aa10.55□□□□□ -0.72
CLCNKA-202ENST00000375692 ZNF469Q96JG9 3925 aaPredicted RBP10.55□□□□□ -0.72
CLCNKA-202ENST00000375692 PPP1R17O96001 155 aa10.55□□□□□ -0.72
CLCNKA-202ENST00000375692 HERVK_113P61574 105 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 APRG1Q8IVJ8 170 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 POM121L12Q8N7R1 296 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 UNC79Q9P2D8 2635 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 IGHV4OR15-8A0A075B7B6 117 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 A0A087WW49 117 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 TRAV12-3A0A0B4J271 114 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 IGHV3-30P01768 117 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 MT-ATP8P03928 68 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 IGHV3-30-5P0DP03 117 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 PF4V1P10720 104 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 FAM74A4Q5TZK3 123 aa10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 ZNF256Q9Y2P7 627 aaPredicted RBP10.54□□□□□ -0.72
CLCNKA-202ENST00000375692 SDHAF1A6NFY7 115 aa10.53□□□□□ -0.72
CLCNKA-202ENST00000375692 FAM159AQ6UWV7 190 aa10.53□□□□□ -0.72
CLCNKA-202ENST00000375692 ATP6V0E2Q8NHE4 81 aa10.53□□□□□ -0.72
CLCNKA-202ENST00000375692 IGHV1-69DA0A0B4J2H0 117 aa10.53□□□□□ -0.72
CLCNKA-202ENST00000375692 VCYO14598 125 aa10.53□□□□□ -0.72
CLCNKA-202ENST00000375692 NXPH4O95158 308 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms