RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 F8VRH5 84 aa15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 DUSP14O95147 198 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 RPL32P62910 135 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 NEGR1Q7Z3B1 354 aa15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 Q8N1Y9 231 aa15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 TRAV8-6A0A0B4J262 113 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 A6NDN8 102 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 HLA-DRB4P13762 266 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 SLURP1P55000 103 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 DEFB136Q30KP8 78 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 KRTAP1-3Q8IUG1 177 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 HLA-DRB4X5D2U9 266 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 AMTNQ6UX39 209 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 FOXI2Q6ZQN5 318 aa15.44■□□□□ 0.06
CCDC88B-203ENST00000359902 IGHV1OR15-1A0A075B7D0 117 aa15.43■□□□□ 0.06
CCDC88B-203ENST00000359902 POLR2KP53803 58 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-203ENST00000359902 CHTOPQ9Y3Y2 248 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-203ENST00000359902 SORL1Q92673 2214 aa15.42■□□□□ 0.06
CCDC88B-203ENST00000359902 TRBV25-1A0A075B6N4 114 aa15.42■□□□□ 0.06
CCDC88B-203ENST00000359902 F5H697 171 aa15.42■□□□□ 0.06
CCDC88B-203ENST00000359902 H3BRM9 83 aa15.42■□□□□ 0.06
CCDC88B-203ENST00000359902 BAALCQ8WXS3 180 aa15.42■□□□□ 0.06
CCDC88B-203ENST00000359902 CREBBPQ92793 2442 aa15.42■□□□□ 0.06
CCDC88B-203ENST00000359902 K7ERU9 68 aa15.41■□□□□ 0.06
CCDC88B-203ENST00000359902 MAPKAPK5-AS1Q8N8E1 139 aa15.41■□□□□ 0.06
CCDC88B-203ENST00000359902 CHAC1Q9BUX1 264 aa15.4■□□□□ 0.06
CCDC88B-203ENST00000359902 SYT8Q8NBV8 401 aa15.4■□□□□ 0.06
CCDC88B-203ENST00000359902 VCYO14598 125 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 FAM74A4Q5TZK3 123 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 GAGE12BA1L429 117 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 C9orf118A6NHY6 69 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 LINC01619G3V211 115 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 CRYGDP07320 174 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 ZFP2Q6ZN57 461 aa15.39■□□□□ 0.05
CCDC88B-203ENST00000359902 PRSS29PA6NIE9 313 aa15.38■□□□□ 0.05
CCDC88B-203ENST00000359902 OR11H1Q8NG94 326 aa15.38■□□□□ 0.05
CCDC88B-203ENST00000359902 DEFB104AQ8WTQ1 72 aa15.38■□□□□ 0.05
CCDC88B-203ENST00000359902 CYSLTR1Q9Y271 337 aa15.38■□□□□ 0.05
CCDC88B-203ENST00000359902 TRBV6-5A0A0K0K1A5 114 aa15.38■□□□□ 0.05
CCDC88B-203ENST00000359902 KNCNA6PVL3 124 aa15.38■□□□□ 0.05
CCDC88B-203ENST00000359902 SDHAF1A6NFY7 115 aa15.37■□□□□ 0.05
CCDC88B-203ENST00000359902 DUX3Q96PT4 197 aa15.37■□□□□ 0.05
CCDC88B-203ENST00000359902 GCSHP23434 173 aa15.37■□□□□ 0.05
CCDC88B-203ENST00000359902 DEFB131AP59861 70 aa15.37■□□□□ 0.05
CCDC88B-203ENST00000359902 C4orf3Q8WVX3 66 aa15.37■□□□□ 0.05
CCDC88B-203ENST00000359902 APCP25054 2843 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 EPG5Q9HCE0 2579 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 TRBV27A0A0K0K1C4 114 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 M0QY20 66 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 TSHBP01222 138 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 RBMY1A1P0DJD3 496 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 RBMY1CP0DJD4 496 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 RBMY1FQ15415 496 aaKnown RBP15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 MORN3Q6PF18 240 aaPredicted RBP15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 KIR2DL4Q99706 377 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 TP53TG1Q9Y2A0 90 aa15.36■□□□□ 0.05
CCDC88B-203ENST00000359902 IGIPA6NJ69 53 aa15.35■□□□□ 0.05
CCDC88B-203ENST00000359902 FXYD2P54710 66 aa15.35■□□□□ 0.05
CCDC88B-203ENST00000359902 ZNF56Q15929 161 aa15.35■□□□□ 0.05
CCDC88B-203ENST00000359902 ZNF876PQ49A33 203 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 TRGV11A0A075B6L2 103 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 LINC01549A6NIU2 74 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 A8MTW9 85 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 H3BUT2 72 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 TMEM61Q8N0U2 210 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 RAB37Q96AX2 223 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 JMJD8Q96S16 334 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 PEMTQ9UBM1 199 aa15.34■□□□□ 0.05
CCDC88B-203ENST00000359902 H3BMM0 161 aa15.33■□□□□ 0.05
CCDC88B-203ENST00000359902 RPL39P62891 51 aaKnown RBP15.33■□□□□ 0.05
CCDC88B-203ENST00000359902 DLX4Q92988 240 aaPredicted RBP15.33■□□□□ 0.05
CCDC88B-203ENST00000359902 TM2D2Q9BX73 214 aa15.33■□□□□ 0.05
CCDC88B-203ENST00000359902 KHDC1LQ5JSQ8 128 aa15.33■□□□□ 0.04
CCDC88B-203ENST00000359902 NAA38Q9BRA0 125 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-203ENST00000359902 ZNF469Q96JG9 3925 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-203ENST00000359902 TRAV2A0A0B4J234 112 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 RIPPLY3P57055 190 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 HIST2H2BDQ6DRA6 164 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 CEND1Q8N111 149 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 OR11H12B2RN74 326 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 SMIM13P0DJ93 91 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 TMEM86BQ8N661 226 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 OR11H2Q8NH07 326 aa15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 ZNF256Q9Y2P7 627 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-203ENST00000359902 RBMY1BA6NDE4 496 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 RBMY1EA6NEQ0 496 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 GAGE10A6NGK3 116 aa15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 RBMY1DP0C7P1 496 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 WFDC11Q8NEX6 87 aa15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 TRPT1Q86TN4 253 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 KLHL30-AS1Q8NEE0 82 aa15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 TMEM141Q96I45 108 aa15.31■□□□□ 0.04
CCDC88B-203ENST00000359902 MYO9AB2RTY4 2548 aa15.3■□□□□ 0.04
CCDC88B-203ENST00000359902 E9PLD3 99 aa15.3■□□□□ 0.04
CCDC88B-203ENST00000359902 Q6ZSV7 163 aa15.3■□□□□ 0.04
CCDC88B-203ENST00000359902 GTF2H5Q6ZYL4 71 aa15.3■□□□□ 0.04
CCDC88B-203ENST00000359902 MYMXA0A1B0GTQ4 84 aa15.29■□□□□ 0.04
CCDC88B-203ENST00000359902 TIMM17AQ99595 171 aa15.29■□□□□ 0.04
CCDC88B-203ENST00000359902 IGLV4-69A0A075B6H9 119 aa15.29■□□□□ 0.04
CCDC88B-203ENST00000359902 HTN1P15515 57 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms