RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 A0A0J9YX75 114 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 FAM236AA0A1B0GUQ0 79 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 FAM236BA0A1B0GV22 79 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 LOXL1Q08397 574 aaPredicted RBP4.96□□□□□ -1.62
UPF2-201ENST00000356352 C11orf45Q8TAV5 145 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 RITA1Q96K30 269 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 TANC1Q9C0D5 1861 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 APC2O95996 2303 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 SPRNQ5BIV9 151 aa4.96□□□□□ -1.62
UPF2-201ENST00000356352 MIR7-3HGQ8N6C7 128 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 C20orf203Q8NBC4 194 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 FAM167A-AS1Q96KT0 104 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 MGAMO43451 1857 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 IGLV1-47P01700 117 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 RPL39P62891 51 aaKnown RBP4.95□□□□□ -1.62
UPF2-201ENST00000356352 UPK3BQ9BT76 320 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 MAP6D1Q9H9H5 199 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 B5MCH6 92 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 HILS1P60008 231 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 AHCTF1Q8WYP5 2266 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 TAX1BP3O14907 124 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 MIAQ16674 131 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 ANKRD39Q53RE8 183 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 Q8N7P7 452 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 MSRB1Q9NZV6 116 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 MPDZO75970 2070 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 CACNA1IQ9P0X4 2223 aa4.95□□□□□ -1.62
UPF2-201ENST00000356352 TNFRSF13BO14836 293 aaPredicted RBP4.94□□□□□ -1.62
UPF2-201ENST00000356352 PTPRDP23468 1912 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 MYO7BQ6PIF6 2116 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 PRAC2D3DTV9 90 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 CASC2Q6XLA1 102 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 GTSF1Q8WW33 167 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 DNAJC9-AS1A6NH13 148 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 K7ERS5 55 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 FOXI1Q12951 378 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 ESM1Q9NQ30 184 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 ATP5EP2Q5VTU8 51 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 ZFAND2AQ8N6M9 145 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 RNF183Q96D59 192 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 TCF20Q9UGU0 1960 aaKnown RBP4.94□□□□□ -1.62
UPF2-201ENST00000356352 IGKV4-1P06312 121 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 CRYGBP07316 175 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 ZFP36P26651 326 aaKnown RBP4.94□□□□□ -1.62
UPF2-201ENST00000356352 SS18L2Q9UHA2 77 aa4.94□□□□□ -1.62
UPF2-201ENST00000356352 YLPM1P49750 1951 aaKnown RBP4.93□□□□□ -1.62
UPF2-201ENST00000356352 WT1P19544 449 aaPredicted RBP4.93□□□□□ -1.62
UPF2-201ENST00000356352 LINC00643Q86TS7 51 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 NFE4Q86UQ8 179 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 DAND5Q8N907 189 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 KMT2EQ8IZD2 1858 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 ARHGEF17Q96PE2 2063 aaPredicted RBP4.93□□□□□ -1.62
UPF2-201ENST00000356352 BPY2O14599 106 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 FRMPD3Q5JV73 1810 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 FXYD2P54710 66 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 REG3AQ06141 175 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 ODF1Q14990 250 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 HIST2H2BDQ6DRA6 164 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 ODF3L1Q8IXM7 274 aa4.93□□□□□ -1.62
UPF2-201ENST00000356352 NUP210Q8TEM1 1887 aaPredicted RBP4.93□□□□□ -1.62
UPF2-201ENST00000356352 CLEC2BQ92478 149 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 FANCMQ8IYD8 2048 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 ODF3BA8MYP8 253 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 FAM110AQ9BQ89 295 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 SPTA1P02549 2419 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 C19orf71A6NCJ1 209 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 FSTL3O95633 263 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 PRB1P04280 392 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 LINC00173Q6ZV60 143 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 PRR15LQ9BU68 103 aa4.92□□□□□ -1.62
UPF2-201ENST00000356352 ZNF706Q9Y5V0 76 aaPredicted RBP4.92□□□□□ -1.62
UPF2-201ENST00000356352 USP17L23D6RBM5 183 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 CRYGDP07320 174 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 Q6YL49 198 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 Q6ZUT4 128 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 C7orf33Q8WU49 177 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 DEFB4AO15263 64 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 IGF1P05019 195 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 SHISA2Q6UWI4 295 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 SPATA12Q7Z6I5 190 aa4.91□□□□□ -1.62
UPF2-201ENST00000356352 TRAV26-1A0A087WT03 109 aa4.9□□□□□ -1.62
UPF2-201ENST00000356352 MIFP14174 115 aa4.9□□□□□ -1.62
UPF2-201ENST00000356352 FAM19A1Q7Z5A9 133 aa4.9□□□□□ -1.62
UPF2-201ENST00000356352 HEATR1Q9H583 2144 aaKnown RBP4.9□□□□□ -1.62
UPF2-201ENST00000356352 CHCHD10Q8WYQ3 142 aaPredicted RBP4.9□□□□□ -1.62
UPF2-201ENST00000356352 A0A0J9YXY3 114 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 IBA57-AS1B1ANH7 110 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 UNQ9165/PRO28630Q6UXU0 137 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 LINC00269Q8N2A0 174 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 LINC00574Q9H8X3 128 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 SPANXB1Q9NS25 103 aaPredicted RBP4.9□□□□□ -1.63
UPF2-201ENST00000356352 TP53BP1Q12888 1972 aaPredicted RBP4.9□□□□□ -1.63
UPF2-201ENST00000356352 NLRC5Q86WI3 1866 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 IGKV2-24A0A0C4DH68 120 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 HIGD2AQ9BW72 106 aa4.9□□□□□ -1.63
UPF2-201ENST00000356352 NCKAP5O14513 1909 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 PRB2P02812 416 aaPredicted RBP4.89□□□□□ -1.63
UPF2-201ENST00000356352 CCDC140Q96MF4 163 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 WFDC2Q14508 124 aa4.89□□□□□ -1.63
UPF2-201ENST00000356352 PRORYQ9H606 182 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms