RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SPANXN1Q5VSR9 72 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 RPP21Q9H633 154 aaKnown RBP6.69□□□□□ -1.34
USP4-202ENST00000351842 PHLDA3Q9Y5J5 127 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 IGHV1OR15-1A0A075B7D0 117 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 A0A087WWL8 130 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 SMIM27A0A1W2PRY6 76 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 K7ERU9 68 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 NUPR1O60356 82 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 MT-ND6P03923 174 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 TDRG1Q3Y452 100 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 TEX43Q6ZNM6 134 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 FAM231DQ6ZW35 169 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 GAGE12BA1L429 117 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 KLLNB2CW77 178 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 GAGE7O76087 117 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 GAGE12FP0CL80 117 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 GAGE12GP0CL81 117 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 GAGE12IP0CL82 117 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 CMC4P56277 68 aaPredicted RBP6.69□□□□□ -1.34
USP4-202ENST00000351842 TWIST1Q15672 202 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 RASL11AQ6T310 242 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 TMEM256Q8N2U0 113 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 SSBP4Q9BWG4 385 aaPredicted RBP6.69□□□□□ -1.34
USP4-202ENST00000351842 PAM16Q9Y3D7 125 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 COX11Q9Y6N1 276 aa6.69□□□□□ -1.34
USP4-202ENST00000351842 ODF1Q14990 250 aa6.68□□□□□ -1.34
USP4-202ENST00000351842 LYZL1Q6UWQ5 148 aa6.68□□□□□ -1.34
USP4-202ENST00000351842 ASIPP42127 132 aa6.68□□□□□ -1.34
USP4-202ENST00000351842 OR10J3Q5JRS4 329 aa6.68□□□□□ -1.34
USP4-202ENST00000351842 GTSF1Q8WW33 167 aa6.68□□□□□ -1.34
USP4-202ENST00000351842 C1QTNF4Q9BXJ3 329 aa6.68□□□□□ -1.34
USP4-202ENST00000351842 TRGV2A0A075B6R0 118 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 SNURFLB1AK76 121 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 ZNF324O75467 553 aaPredicted RBP6.67□□□□□ -1.34
USP4-202ENST00000351842 F5H697 171 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 MGPP08493 103 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 VAMP3Q15836 100 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 ZNF876PQ49A33 203 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 TMEM136Q6ZRR5 245 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 FER1L6-AS1Q8NA97 138 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 MRPL18Q9H0U6 180 aaKnown RBP6.67□□□□□ -1.34
USP4-202ENST00000351842 KIAA1644Q3SXP7 199 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 Q6ZTI0 123 aa6.67□□□□□ -1.34
USP4-202ENST00000351842 IGHV4-28A0A0C4DH34 117 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 A0A1B0GV72 72 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 A8MWL6 223 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 CRISP2P16562 243 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 Q6ZWC4 215 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 C14orf178Q8N769 122 aaPredicted RBP6.66□□□□□ -1.34
USP4-202ENST00000351842 Q8N976 141 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 WIPF1O43516 503 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 NUP35Q8NFH5 326 aa6.66□□□□□ -1.34
USP4-202ENST00000351842 A0A0J9YWU9 116 aa6.65□□□□□ -1.34
USP4-202ENST00000351842 C19orf71A6NCJ1 209 aa6.65□□□□□ -1.34
USP4-202ENST00000351842 NTF3P20783 257 aa6.65□□□□□ -1.34
USP4-202ENST00000351842 EVI2AP22794 236 aa6.65□□□□□ -1.34
USP4-202ENST00000351842 VAMP8Q9BV40 100 aa6.65□□□□□ -1.34
USP4-202ENST00000351842 LAMTOR2Q9Y2Q5 125 aa6.65□□□□□ -1.34
USP4-202ENST00000351842 TRAV26-2A0A0B4J265 109 aa6.65□□□□□ -1.35
USP4-202ENST00000351842 FAM222AQ5U5X8 452 aa6.65□□□□□ -1.35
USP4-202ENST00000351842 BORCS7Q96B45 105 aa6.65□□□□□ -1.35
USP4-202ENST00000351842 FAM19A4Q96LR4 140 aa6.65□□□□□ -1.35
USP4-202ENST00000351842 A0A096LPF7 62 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 SERF1AO75920 110 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 MORN3Q6PF18 240 aaPredicted RBP6.64□□□□□ -1.35
USP4-202ENST00000351842 CELA1Q9UNI1 258 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 HLA-DQA1P01909 254 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 RNASE3P12724 160 aaKnown RBP6.64□□□□□ -1.35
USP4-202ENST00000351842 CTRLP40313 264 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 CRYBA4P53673 196 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 Q6AWC8 147 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 CSNK1G2-AS1Q8NCQ2 148 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 KCNS1Q96KK3 526 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 OVOL2Q9BRP0 275 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 SAMD10Q9BYL1 202 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 LENEPQ9Y5L5 61 aa6.64□□□□□ -1.35
USP4-202ENST00000351842 SMKR1H3BMG3 65 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 NCR2O95944 276 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 ERASQ7Z444 233 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 TSKUQ8WUA8 353 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 ZMAT4Q9H898 229 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 TRAV26-1A0A087WT03 109 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 A0A0J9YY99 117 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 FBLL1A6NHQ2 334 aaKnown RBP6.63□□□□□ -1.35
USP4-202ENST00000351842 HINT1P49773 126 aaPredicted RBP6.63□□□□□ -1.35
USP4-202ENST00000351842 ZNF479Q96JC4 524 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 X6R8D5 127 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 DNAH3Q8TD57 4116 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 CSMD3Q7Z407 3707 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 NANOS2P60321 138 aaKnown RBP6.63□□□□□ -1.35
USP4-202ENST00000351842 RPS20P60866 119 aaKnown RBP6.63□□□□□ -1.35
USP4-202ENST00000351842 ZNF415Q09FC8 603 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 ZNF56Q15929 161 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 KRTAP21-3Q3LHN1 58 aa6.63□□□□□ -1.35
USP4-202ENST00000351842 TRBV6-1A0A0K0K1D8 114 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 HNRNPA3P51991 378 aaKnown RBP6.62□□□□□ -1.35
USP4-202ENST00000351842 CT83Q5H943 113 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 Q6ZN92 141 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 NAT8BQ9UHF3 227 aa6.62□□□□□ -1.35
USP4-202ENST00000351842 TRGV11A0A075B6L2 103 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms