RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 A8MWV9 139 aa10.74□□□□□ -0.69
CCDC88C-202ENST00000334448 PRM2P04554 102 aa10.74□□□□□ -0.69
CCDC88C-202ENST00000334448 SSTP61278 116 aa10.74□□□□□ -0.69
CCDC88C-202ENST00000334448 C18orf32Q8TCD1 76 aa10.74□□□□□ -0.69
CCDC88C-202ENST00000334448 EDA2RQ9HAV5 297 aa10.74□□□□□ -0.69
CCDC88C-202ENST00000334448 D6R8Y8 96 aa10.73□□□□□ -0.69
CCDC88C-202ENST00000334448 CRYGDP07320 174 aa10.73□□□□□ -0.69
CCDC88C-202ENST00000334448 ESDP10768 282 aa10.73□□□□□ -0.69
CCDC88C-202ENST00000334448 C14orf178Q8N769 122 aaPredicted RBP10.73□□□□□ -0.69
CCDC88C-202ENST00000334448 RNF183Q96D59 192 aa10.73□□□□□ -0.69
CCDC88C-202ENST00000334448 TP53TG1Q9Y2A0 90 aa10.73□□□□□ -0.69
CCDC88C-202ENST00000334448 NOTCH1P46531 2555 aa10.72□□□□□ -0.69
CCDC88C-202ENST00000334448 HOXA5P20719 270 aa10.72□□□□□ -0.69
CCDC88C-202ENST00000334448 CKS2P33552 79 aa10.72□□□□□ -0.69
CCDC88C-202ENST00000334448 UFSP1Q6NVU6 142 aa10.72□□□□□ -0.69
CCDC88C-202ENST00000334448 PRELID3AQ96N28 172 aa10.72□□□□□ -0.69
CCDC88C-202ENST00000334448 RHODO00212 210 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 RS1O15537 224 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 SMIM17P0DL12 118 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 NDUFA6P56556 154 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 LINC00310P59036 64 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 LINC00612Q8N6U2 182 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 C18orf15Q96N68 181 aa10.71□□□□□ -0.69
CCDC88C-202ENST00000334448 PRSS47A8MTI9 375 aa10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 PPP1R17O96001 155 aa10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 SNRPEP62304 92 aaKnown RBP10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 DEFB135Q30KP9 77 aa10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 ZFP2Q6ZN57 461 aa10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 NRACQ8N912 160 aa10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 JPT2Q9H910 190 aa10.7□□□□□ -0.7
CCDC88C-202ENST00000334448 CIDEAO60543 219 aa10.69□□□□□ -0.7
CCDC88C-202ENST00000334448 MIFP14174 115 aa10.69□□□□□ -0.7
CCDC88C-202ENST00000334448 CFAP126Q5VTH2 177 aa10.69□□□□□ -0.7
CCDC88C-202ENST00000334448 SAMD10Q9BYL1 202 aa10.69□□□□□ -0.7
CCDC88C-202ENST00000334448 MRPL16Q9NX20 251 aaKnown RBP10.69□□□□□ -0.7
CCDC88C-202ENST00000334448 A0A087WWL8 130 aa10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 NCR2O95944 276 aa10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 NPYP01303 97 aa10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 RPL32P62910 135 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 BAGE3Q86Y29 109 aa10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 HIST3H2BBQ8N257 126 aa10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 PACRGQ96M98 296 aaPredicted RBP10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 NOP10Q9NPE3 64 aaKnown RBP10.68□□□□□ -0.7
CCDC88C-202ENST00000334448 TRGV1A0A0A0MS02 117 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 TRAV4A0A0B4J268 109 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 TRBV6-5A0A0K0K1A5 114 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 LOC105371267A0A1B0GV96 52 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 LINC01546A6NGU7 62 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 LYRM9A8MSI8 78 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 SMKR1H3BMG3 65 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 SERF1AO75920 110 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 TNFRSF6BO95407 300 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 IQCJQ1A5X6 159 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 SUMO4Q6EEV6 95 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 Q6ZTI0 123 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 Q8NAQ8 132 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 OR11H2Q8NH07 326 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 CHCHD1Q96BP2 118 aaKnown RBP10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 URB1-AS1Q96HZ7 61 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 C20orf78Q9BR46 151 aa10.67□□□□□ -0.7
CCDC88C-202ENST00000334448 K7EIL1 84 aa10.66□□□□□ -0.7
CCDC88C-202ENST00000334448 M0QY20 66 aa10.66□□□□□ -0.7
CCDC88C-202ENST00000334448 GAS8-AS1O95177 125 aa10.66□□□□□ -0.7
CCDC88C-202ENST00000334448 MGPP08493 103 aa10.66□□□□□ -0.7
CCDC88C-202ENST00000334448 MAP1LC3AQ9H492 121 aa10.66□□□□□ -0.7
CCDC88C-202ENST00000334448 TRAV26-2A0A0B4J265 109 aa10.65□□□□□ -0.7
CCDC88C-202ENST00000334448 IGHV4-28A0A0C4DH34 117 aa10.65□□□□□ -0.7
CCDC88C-202ENST00000334448 H7C1H1 209 aa10.65□□□□□ -0.7
CCDC88C-202ENST00000334448 IGHV3-53P01767 116 aa10.65□□□□□ -0.7
CCDC88C-202ENST00000334448 FAM74A4Q5TZK3 123 aa10.65□□□□□ -0.7
CCDC88C-202ENST00000334448 IGLV2-18A0A075B6J9 118 aa10.64□□□□□ -0.71
CCDC88C-202ENST00000334448 IFITM10A6NMD0 228 aa10.64□□□□□ -0.71
CCDC88C-202ENST00000334448 GATA1P15976 413 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-202ENST00000334448 ZNF56Q15929 161 aa10.64□□□□□ -0.71
CCDC88C-202ENST00000334448 NXT2Q9NPJ8 142 aaKnown RBP10.64□□□□□ -0.71
CCDC88C-202ENST00000334448 NUPR1O60356 82 aa10.63□□□□□ -0.71
CCDC88C-202ENST00000334448 LINC00614P0C842 121 aa10.63□□□□□ -0.71
CCDC88C-202ENST00000334448 PMCHP20382 165 aa10.63□□□□□ -0.71
CCDC88C-202ENST00000334448 SUMO2P61956 95 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-202ENST00000334448 NIT1Q86X76 327 aa10.63□□□□□ -0.71
CCDC88C-202ENST00000334448 OR4C5Q8NGB2 326 aa10.63□□□□□ -0.71
CCDC88C-202ENST00000334448 NBEAL2Q6ZNJ1 2754 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 TEX48A0A1B0GUV7 120 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 F5H697 171 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 K7EMI3 77 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 Q8N8P6 123 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 HIST1H2BLQ99880 126 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 SMIM2Q9BVW6 85 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 C11orf68Q9H3H3 251 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 AP5S1Q9NUS5 200 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 DKK2Q9UBU2 259 aa10.62□□□□□ -0.71
CCDC88C-202ENST00000334448 IFI27P40305 119 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 POLR2KP53803 58 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 FA2HQ7L5A8 372 aa10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 PRSS3P2Q8NHM4 247 aa10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 TMEM18Q96B42 140 aa10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 RPL39LQ96EH5 51 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 ZNF479Q96JC4 524 aa10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 NIT2Q9NQR4 276 aa10.61□□□□□ -0.71
CCDC88C-202ENST00000334448 TRGV2A0A075B6R0 118 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms