RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 IGIPA6NJ69 53 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 PPP1R17O96001 155 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 TRPT1Q86TN4 253 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 RAX2Q96IS3 184 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 TRAV4A0A0B4J268 109 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 M0R1W7 72 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 ZFAND2AQ8N6M9 145 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 C16orf92Q96LL3 132 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 ZNF462Q96JM2 2506 aa13.65□□□□□ -0.22
CLSTN3-202ENST00000331148 SPTAN1Q13813 2472 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 EIF4EBP3O60516 100 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 EBI3Q14213 229 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 TMEM170BQ5T4T1 132 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 VMO1Q7Z5L0 202 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 C20orf173Q96LM9 149 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 FAM208BQ5VWN6 2430 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 TACC2O95359 2948 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 USP9XQ93008 2570 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 TRAV21A0A0B4J279 112 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 CRLF1O75462 422 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 Q8N9W7 124 aa13.64□□□□□ -0.23
CLSTN3-202ENST00000331148 A4D1N5 150 aa13.63□□□□□ -0.23
CLSTN3-202ENST00000331148 IGHV3-33P01772 117 aa13.63□□□□□ -0.23
CLSTN3-202ENST00000331148 CCL19Q99731 98 aa13.63□□□□□ -0.23
CLSTN3-202ENST00000331148 COL12A1Q99715 3063 aa13.63□□□□□ -0.23
CLSTN3-202ENST00000331148 J3QQQ9 107 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 ANXA2RQ3ZCQ2 193 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 ZNRF2Q8NHG8 242 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 U3KQE9 123 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 IGHV4-39P01824 125 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 MED14OSP0DP75 135 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 NTN5Q8WTR8 489 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 TMEM263Q8WUH6 116 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 TMEM141Q96I45 108 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 MYO18BQ8IUG5 2567 aa13.62□□□□□ -0.23
CLSTN3-202ENST00000331148 GAGE12JA6NER3 117 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 GAGE7O76087 117 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 GAGE12FP0CL80 117 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 GAGE12GP0CL81 117 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 GAGE12IP0CL82 117 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 P0DMU3 169 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 FAM231AP0DMU4 169 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 FAM231CP0DMU5 169 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 LGALS3P17931 250 aaKnown RBP13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 RPL39P62891 51 aaKnown RBP13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 GAGE4Q13068 117 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 KLK9Q2XQG4 91 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 C9orf139Q6ZV77 190 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 Q8N1Y9 231 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 POM121L12Q8N7R1 296 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 BPESC1Q9GZL8 116 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 KLK9Q9UKQ9 250 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 CSMD1Q96PZ7 3565 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 CCDC179H3BU77 68 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 RPL32P62910 135 aaKnown RBP13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 DEFB104AQ8WTQ1 72 aa13.61□□□□□ -0.23
CLSTN3-202ENST00000331148 ARHGAP32A7KAX9 2087 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 OOSP1A8MZH6 123 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 ATP6V0E1O15342 81 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 IFITM1P13164 125 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 LINC00477Q96M19 166 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 TIMM17AQ99595 171 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 AKAP6Q13023 2319 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 A0A0B4J2C4 111 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 H7C2G1 150 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 J3QKU1 62 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 ZFP36P26651 326 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 ARL3P36405 182 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 ZNF876PQ49A33 203 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 EEF1AKMT3Q96AZ1 226 aa13.6□□□□□ -0.23
CLSTN3-202ENST00000331148 TTC32Q5I0X7 151 aa13.59□□□□□ -0.23
CLSTN3-202ENST00000331148 Q6Q795 121 aa13.59□□□□□ -0.23
CLSTN3-202ENST00000331148 C1orf122Q6ZSJ8 110 aa13.59□□□□□ -0.23
CLSTN3-202ENST00000331148 GNRH2O43555 120 aa13.59□□□□□ -0.23
CLSTN3-202ENST00000331148 RNASE3P12724 160 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-202ENST00000331148 ELANEP08246 267 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 LINC00315P59091 139 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 LMO4P61968 165 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 ATXN8Q156A1 80 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 LINC01620Q4KN68 170 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 OR10J6PQ8NGY7 276 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 KIF25-AS1Q9Y6Z4 181 aa13.58□□□□□ -0.24
CLSTN3-202ENST00000331148 IGHV4OR15-8A0A075B7B6 117 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 A0A087WW49 117 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 POLR2KP53803 58 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 ODF3Q96PU9 254 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 NXPH4O95158 308 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 PLA2G2AP14555 144 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 RPL13AP40429 203 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 MINOS1Q5TGZ0 78 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 MINOS1-NBL1R4GNA1 71 aa13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 UBR5O95071 2799 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-202ENST00000331148 TRAV2A0A0B4J234 112 aa13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 TRAV8-4A0A0B4J246 113 aa13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 TRBV7-9A0A0J9YWB2 115 aa13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 G3V318 75 aa13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 RNASE4P34096 147 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 DEFB1P60022 68 aa13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 LINC01600Q96MT4 127 aa13.56□□□□□ -0.24
CLSTN3-202ENST00000331148 TRBV7-1A0A0A6YYK4 115 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms