RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 IGHV3-33P01772 117 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 IGHV3-30-3P0DP02 117 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 IGHV3-30-5P0DP03 117 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 LGALS9BQ3B8N2 356 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 C9orf66Q5T8R8 295 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 LGALS9CQ6DKI2 356 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 SCRT2Q9NQ03 307 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 TNRC6BQ9UPQ9 1833 aaKnown RBP7.88□□□□□ -1.15
CHD3-201ENST00000330494 KIR2DL5BA0A0G2JN68 375 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 KIR2DL5BA0A0G2JPC4 375 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 KIR2DL5AQ8N109 375 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 DEFB105AQ8NG35 78 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 TEX22C9J3V5 150 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 GYPEP15421 78 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 C11orf52Q96A22 123 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 SPG11Q96JI7 2443 aa7.88□□□□□ -1.15
CHD3-201ENST00000330494 DEFB125Q8N687 156 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 KLF5Q13887 457 aaPredicted RBP7.87□□□□□ -1.15
CHD3-201ENST00000330494 LINC01548A6NM66 108 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 C16orf54Q6UWD8 224 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 PYGO2Q9BRQ0 406 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 SPANXCQ9NY87 97 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 C2orf70A6NJV1 201 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 K7EMI3 77 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 IGHG4P01861 327 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 TDRG1Q3Y452 100 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 UNQ9165/PRO28630Q6UXU0 137 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 CREBBPQ92793 2442 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 SVIPQ8NHG7 77 aa7.87□□□□□ -1.15
CHD3-201ENST00000330494 RHOHQ15669 191 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 SRSF2Q01130 221 aaKnown RBP7.86□□□□□ -1.15
CHD3-201ENST00000330494 BRK1Q8WUW1 75 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 F8VRH5 84 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 BUB3O43684 328 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 HERV-K104P63124 156 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 FAM236AA0A1B0GUQ0 79 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 FAM236BA0A1B0GV22 79 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 PCP2Q8IVA1 136 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 PRORYQ9H606 182 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 DEFB135Q30KP9 77 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 LINC00173Q6ZV60 143 aa7.86□□□□□ -1.15
CHD3-201ENST00000330494 SIVA1O15304 175 aa7.85□□□□□ -1.15
CHD3-201ENST00000330494 CRLF1O75462 422 aa7.85□□□□□ -1.15
CHD3-201ENST00000330494 RPL18AQ02543 176 aaKnown RBP7.85□□□□□ -1.15
CHD3-201ENST00000330494 Q8N1Y9 231 aa7.85□□□□□ -1.15
CHD3-201ENST00000330494 J3QQQ9 107 aa7.85□□□□□ -1.15
CHD3-201ENST00000330494 TAL2Q16559 108 aa7.85□□□□□ -1.15
CHD3-201ENST00000330494 Q6ZSR3 168 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 SIRPDQ9H106 197 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 DAZAP2Q15038 168 aaPredicted RBP7.84□□□□□ -1.15
CHD3-201ENST00000330494 DSCR8Q96T75 97 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 HERVK_113P63121 156 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 WFDC2Q14508 124 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 PTPN13Q12923 2485 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 LYPD6Q86Y78 171 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 RBAKDNA6NC62 111 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 IGLV1-47P01700 117 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 DNAJC9-AS1A6NH13 148 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 G3V4G9 280 aa7.84□□□□□ -1.15
CHD3-201ENST00000330494 A0A1B0GX51 115 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 C20orf78Q9BR46 151 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 RPL39P62891 51 aaKnown RBP7.83□□□□□ -1.16
CHD3-201ENST00000330494 FAM167A-AS1Q96KT0 104 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 Q9H8V8 135 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 CENPFP49454 3210 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 WI2-2373I1.2A0A1W2PRP0 233 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 NUPR1O60356 82 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 GTSF1Q8WW33 167 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 IGLL5B9A064 214 aa7.83□□□□□ -1.16
CHD3-201ENST00000330494 IGKV3D-7A0A0C4DH55 119 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 F8W735 103 aaPredicted RBP7.82□□□□□ -1.16
CHD3-201ENST00000330494 K7EQD1 137 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 C16orf74Q96GX8 76 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 CRYGCP07315 174 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 NDUFS5O43920 106 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 FRMD6-AS1P0C7T7 363 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 UBE2BP63146 152 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 WFDC11Q8NEX6 87 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 hADV29S1A0JD25 119 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 IGHG2P01859 326 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 BAALC-AS2P0C853 105 aa7.82□□□□□ -1.16
CHD3-201ENST00000330494 C1orf229Q6ZS94 237 aaPredicted RBP7.81□□□□□ -1.16
CHD3-201ENST00000330494 MDFICQ9P1T7 246 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 DAND5Q8N907 189 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 CLPSL1A2RUU4 121 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 LYPD6BQ8NI32 183 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 PRO3102Q9H379 93 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 CFC1BP0CG36 223 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 CFC1P0CG37 223 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 ATP6V0E2Q8NHE4 81 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 CUL9Q8IWT3 2517 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 CSPG4Q6UVK1 2322 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 SPART-AS1P0CW21 52 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 ZNF493Q6ZR52 646 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 RNF183Q96D59 192 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 ZNF747Q9BV97 191 aa7.81□□□□□ -1.16
CHD3-201ENST00000330494 RAI1Q7Z5J4 1906 aaPredicted RBP7.81□□□□□ -1.16
CHD3-201ENST00000330494 MUC22E2RYF6 1773 aaPredicted RBP7.81□□□□□ -1.16
CHD3-201ENST00000330494 C4orf3Q8WVX3 66 aa7.8□□□□□ -1.16
CHD3-201ENST00000330494 HHLA3Q9XRX5 114 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 174 ms