RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 C20orf78Q9BR46 151 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 MUC4Q99102 2169 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 K7EMT4 169 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 RIPPLY3P57055 190 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 NEXN-AS1Q8NBZ9 246 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 CSTL1Q9H114 145 aa12.05□□□□□ -0.48
USHBP1-202ENST00000324554 CHTOPQ9Y3Y2 248 aaKnown RBP12.05□□□□□ -0.48
USHBP1-202ENST00000324554 GATA3P23771 443 aa12.04□□□□□ -0.48
USHBP1-202ENST00000324554 PSMB8P28062 276 aa12.04□□□□□ -0.48
USHBP1-202ENST00000324554 DCANP1Q8TF63 244 aa12.04□□□□□ -0.48
USHBP1-202ENST00000324554 ZNF580Q9UK33 172 aa12.04□□□□□ -0.48
USHBP1-202ENST00000324554 HECTD1Q9ULT8 2610 aa12.04□□□□□ -0.48
USHBP1-202ENST00000324554 KLLNB2CW77 178 aa12.03□□□□□ -0.48
USHBP1-202ENST00000324554 FLNAP21333 2647 aaKnown RBP12.03□□□□□ -0.48
USHBP1-202ENST00000324554 C2orf66Q6UXQ4 117 aa12.03□□□□□ -0.48
USHBP1-202ENST00000324554 DUX5Q96PT3 197 aa12.03□□□□□ -0.48
USHBP1-202ENST00000324554 BAALCQ8WXS3 180 aa12.02□□□□□ -0.48
USHBP1-202ENST00000324554 ACANP16112 2415 aa12.02□□□□□ -0.49
USHBP1-202ENST00000324554 IGLL5B9A064 214 aa12.02□□□□□ -0.49
USHBP1-202ENST00000324554 E9PLD3 99 aa12.02□□□□□ -0.49
USHBP1-202ENST00000324554 NXPH4O95158 308 aa12.02□□□□□ -0.49
USHBP1-202ENST00000324554 C10orf99Q6UWK7 81 aa12.02□□□□□ -0.49
USHBP1-202ENST00000324554 HIST1H4GQ99525 98 aa12.02□□□□□ -0.49
USHBP1-202ENST00000324554 CUBNO60494 3623 aa12.01□□□□□ -0.49
USHBP1-202ENST00000324554 ID1P41134 155 aa12.01□□□□□ -0.49
USHBP1-202ENST00000324554 TAL2Q16559 108 aa12.01□□□□□ -0.49
USHBP1-202ENST00000324554 C12orf74Q32Q52 190 aa12.01□□□□□ -0.49
USHBP1-202ENST00000324554 LRRC75A-AS1Q8N1F1 130 aa12.01□□□□□ -0.49
USHBP1-202ENST00000324554 TRBV7-3A0A075B6L6 115 aa12.01□□□□□ -0.49
USHBP1-202ENST00000324554 FASNP49327 2511 aaKnown RBP12.01□□□□□ -0.49
USHBP1-202ENST00000324554 MYMXA0A1B0GTQ4 84 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 OR11H12B2RN74 326 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 POM121L12Q8N7R1 296 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 OR11H1Q8NG94 326 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 OR11H2Q8NH07 326 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 UNC79Q9P2D8 2635 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 PRSS29PA6NIE9 313 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 LINC00315P59091 139 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 SAMD13Q5VXD3 122 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 DEFB104AQ8WTQ1 72 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 WFDC12Q8WWY7 111 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 KIF25-AS1Q9Y6Z4 181 aa12□□□□□ -0.49
USHBP1-202ENST00000324554 FAM159AQ6UWV7 190 aa11.99□□□□□ -0.49
USHBP1-202ENST00000324554 JPT2Q9H910 190 aa11.99□□□□□ -0.49
USHBP1-202ENST00000324554 ZNF479Q96JC4 524 aa11.99□□□□□ -0.49
USHBP1-202ENST00000324554 J3QLI3 93 aa11.98□□□□□ -0.49
USHBP1-202ENST00000324554 LGALS1P09382 135 aaKnown RBP11.98□□□□□ -0.49
USHBP1-202ENST00000324554 TEX48A0A1B0GUV7 120 aa11.98□□□□□ -0.49
USHBP1-202ENST00000324554 DUSP14O95147 198 aaKnown RBP11.98□□□□□ -0.49
USHBP1-202ENST00000324554 PPP1R17O96001 155 aa11.98□□□□□ -0.49
USHBP1-202ENST00000324554 RPL24P83731 157 aaKnown RBP11.98□□□□□ -0.49
USHBP1-202ENST00000324554 FOXI2Q6ZQN5 318 aa11.98□□□□□ -0.49
USHBP1-202ENST00000324554 PRADC1Q9BSG0 188 aa11.98□□□□□ -0.49
USHBP1-202ENST00000324554 TRAV12-3A0A0B4J271 114 aa11.97□□□□□ -0.49
USHBP1-202ENST00000324554 CRYGDP07320 174 aa11.97□□□□□ -0.49
USHBP1-202ENST00000324554 CYSLTR1Q9Y271 337 aa11.97□□□□□ -0.49
USHBP1-202ENST00000324554 ZNF688P0C7X2 276 aa11.97□□□□□ -0.49
USHBP1-202ENST00000324554 TSHBP01222 138 aa11.96□□□□□ -0.49
USHBP1-202ENST00000324554 CD7P09564 240 aa11.96□□□□□ -0.49
USHBP1-202ENST00000324554 IGHV4OR15-8A0A075B7B6 117 aa11.96□□□□□ -0.5
USHBP1-202ENST00000324554 A0A087WW49 117 aa11.96□□□□□ -0.5
USHBP1-202ENST00000324554 TMEM89A2RUT3 159 aa11.96□□□□□ -0.5
USHBP1-202ENST00000324554 LINC01619G3V211 115 aa11.96□□□□□ -0.5
USHBP1-202ENST00000324554 HOXA3O43365 443 aaPredicted RBP11.96□□□□□ -0.5
USHBP1-202ENST00000324554 A0A1B0GWB2 263 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 H3BMG7 143 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 WFDC2Q14508 124 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 AMTNQ6UX39 209 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 NOTCH2Q04721 2471 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 A0A087WWL8 130 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 SUMO4Q6EEV6 95 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 ODF3Q96PU9 254 aa11.95□□□□□ -0.5
USHBP1-202ENST00000324554 EMP1P54849 157 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 RRN3P1Q2M238 152 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 PLEKHB2Q96CS7 222 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 TP53TG1Q9Y2A0 90 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 A0A0J9YX75 114 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 ZNF815PA8K554 130 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 FSHBP01225 129 aa11.94□□□□□ -0.5
USHBP1-202ENST00000324554 POLR2KP53803 58 aaKnown RBP11.94□□□□□ -0.5
USHBP1-202ENST00000324554 RPL39P62891 51 aaKnown RBP11.94□□□□□ -0.5
USHBP1-202ENST00000324554 RPL32P62910 135 aaKnown RBP11.94□□□□□ -0.5
USHBP1-202ENST00000324554 IGLV4-69A0A075B6H9 119 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 TRAV12-2A0A075B6T6 113 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 K7EQG2 157 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 IGKV3-20P01619 116 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 SNRPD3P62318 126 aaKnown RBP11.93□□□□□ -0.5
USHBP1-202ENST00000324554 ZFP2Q6ZN57 461 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 KLHL30-AS1Q8NEE0 82 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 NF1P21359 2839 aa11.93□□□□□ -0.5
USHBP1-202ENST00000324554 IGIPA6NJ69 53 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 C11orf86A6NJI1 115 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 SYNJ2BPP57105 145 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 CD300EQ496F6 205 aaPredicted RBP11.92□□□□□ -0.5
USHBP1-202ENST00000324554 MORN3Q6PF18 240 aaPredicted RBP11.92□□□□□ -0.5
USHBP1-202ENST00000324554 IGHV3-16A0A0C4DH30 117 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 Q6YL49 198 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 MTURNQ8N3F0 131 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 C9orf85Q96MD7 179 aa11.92□□□□□ -0.5
USHBP1-202ENST00000324554 F8W1H4 67 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms