RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 LMO4P61968 165 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 BRI3O95415 125 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 SND1-IT1Q9HBX3 110 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 LOXL1Q08397 574 aaPredicted RBP5.94□□□□□ -1.46
SCN9A-201ENST00000303354 PYY3Q5JQD4 70 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 TSC2P49815 1807 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 KIAA2026Q5HYC2 2103 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 USF3Q68DE3 2245 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 LOC100131303A0A0U1RQF7 123 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 ETV2O00321 342 aaPredicted RBP5.94□□□□□ -1.46
SCN9A-201ENST00000303354 NPSP0C0P6 89 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 OVOL2Q9BRP0 275 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 TRBV7-3A0A075B6L6 115 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 NDUFA1O15239 70 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 C9orf85Q96MD7 179 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 DOCK7Q96N67 2140 aa5.94□□□□□ -1.46
SCN9A-201ENST00000303354 A8MWP6 167 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 EDN2P20800 178 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 SPINK6Q6UWN8 80 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 Q6ZWC4 215 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 IGLV2-8P01709 118 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 LY96Q9Y6Y9 160 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 IGHG2P01859 326 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 DAZ2Q13117 558 aaKnown RBP5.93□□□□□ -1.46
SCN9A-201ENST00000303354 DAZ4Q86SG3 579 aaKnown RBP5.93□□□□□ -1.46
SCN9A-201ENST00000303354 DAZ3Q9NR90 486 aaKnown RBP5.93□□□□□ -1.46
SCN9A-201ENST00000303354 RLFQ13129 1914 aa5.93□□□□□ -1.46
SCN9A-201ENST00000303354 TANC1Q9C0D5 1861 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 PRO1854Q9UHT4 67 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 SHISA2Q6UWI4 295 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 SPRY4Q9C004 299 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 DYSFO75923 2080 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 C1orf229Q6ZS94 237 aaPredicted RBP5.92□□□□□ -1.46
SCN9A-201ENST00000303354 WI2-2373I1.2A0A1W2PRP0 233 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 NTN5Q8WTR8 489 aaPredicted RBP5.92□□□□□ -1.46
SCN9A-201ENST00000303354 BBC3Q96PG8 261 aaPredicted RBP5.92□□□□□ -1.46
SCN9A-201ENST00000303354 F8VRH5 84 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 ORMDL1Q9P0S3 153 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 UBE2D1P51668 147 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 C20orf173Q96LM9 149 aa5.92□□□□□ -1.46
SCN9A-201ENST00000303354 IGLV3-1P01715 115 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 NOTCH4Q99466 2003 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 SIP14410 1827 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 IGLC2P0DOY2 106 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 IGLC3P0DOY3 106 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 SCXQ7RTU7 201 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 CLEC2BQ92478 149 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 PRO0255Q9UI72 69 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 NDUFS6O75380 124 aaKnown RBP5.91□□□□□ -1.46
SCN9A-201ENST00000303354 IGLV2-11P01706 119 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 MIR7-3HGQ8N6C7 128 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 CLUHP3Q96NS8 147 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 FRMD6-AS1P0C7T7 363 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 Q6ZUT4 128 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 WFDC9Q8NEX5 89 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 XAGE1AQ9HD64 81 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 C8orf31Q8N9H6 132 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 CCDC140Q96MF4 163 aa5.91□□□□□ -1.46
SCN9A-201ENST00000303354 RPL37AP8A6NKH3 93 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 IGF2-ASQ6U949 168 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 ZNF493Q6ZR52 646 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 B9D2Q9BPU9 175 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 INAFM2P0DMQ5 153 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 IGKV2D-26A0A0A0MRZ7 120 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 REG3AQ06141 175 aa5.9□□□□□ -1.46
SCN9A-201ENST00000303354 IGKV2-28A0A075B6P5 120 aa5.9□□□□□ -1.47
SCN9A-201ENST00000303354 IGKV2D-28P01615 120 aa5.9□□□□□ -1.47
SCN9A-201ENST00000303354 KIF26BQ2KJY2 2108 aa5.9□□□□□ -1.47
SCN9A-201ENST00000303354 SLPIP03973 132 aa5.9□□□□□ -1.47
SCN9A-201ENST00000303354 DEFB114Q30KQ6 69 aa5.9□□□□□ -1.47
SCN9A-201ENST00000303354 RETNLBQ9BQ08 111 aa5.9□□□□□ -1.47
SCN9A-201ENST00000303354 IGLV9-49A0A0B4J1Y8 123 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 C20orf78Q9BR46 151 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 NLRC5Q86WI3 1866 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 TNFRSF13BO14836 293 aaPredicted RBP5.89□□□□□ -1.47
SCN9A-201ENST00000303354 TMEM263Q8WUH6 116 aaKnown RBP5.89□□□□□ -1.47
SCN9A-201ENST00000303354 IGKV4-1P06312 121 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 C12orf74Q32Q52 190 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 ETDBQ3ZM63 59 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 BVES-AS1Q5T3Y7 98 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 LINC01006Q8NI28 216 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 PLXNA2O75051 1894 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 Q8N976 141 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 NCOR1P1Q9H4R4 102 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 UBE2D4Q9Y2X8 147 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 TNRC6BQ9UPQ9 1833 aaKnown RBP5.89□□□□□ -1.47
SCN9A-201ENST00000303354 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.89□□□□□ -1.476e-7■■■■■ 39.1
SCN9A-201ENST00000303354 IGLV1-47P01700 117 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 ZNF80P51504 273 aaPredicted RBP5.89□□□□□ -1.47
SCN9A-201ENST00000303354 IL17DQ8TAD2 202 aa5.89□□□□□ -1.47
SCN9A-201ENST00000303354 IGHV4-30-4P0DP06 118 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 LGALS9BQ3B8N2 356 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 LGALS9CQ6DKI2 356 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 MAP1BP46821 2468 aaKnown RBP5.88□□□□□ -1.47
SCN9A-201ENST00000303354 LRRC75A-AS1Q8N1F1 130 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 TRBV6-1A0A0K0K1D8 114 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 NDUFB1O75438 58 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 C11orf52Q96A22 123 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 A0A0J9YX75 114 aa5.88□□□□□ -1.47
SCN9A-201ENST00000303354 Q0VG73 95 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms