RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 B4DEV8 164 aa9.61□□□□□ -0.87
CCDC88B-201ENST00000301897 CXorf1O96002 111 aa9.61□□□□□ -0.87
CCDC88B-201ENST00000301897 DNLZQ5SXM8 178 aa9.61□□□□□ -0.87
CCDC88B-201ENST00000301897 OR11H4Q8NGC9 324 aa9.61□□□□□ -0.87
CCDC88B-201ENST00000301897 PSMG3Q9BT73 122 aaPredicted RBP9.61□□□□□ -0.87
CCDC88B-201ENST00000301897 JPT2Q9H910 190 aa9.61□□□□□ -0.87
CCDC88B-201ENST00000301897 A0A1W2PRE2 83 aa9.6□□□□□ -0.87
CCDC88B-201ENST00000301897 RPL36AP83881 106 aaKnown RBP9.6□□□□□ -0.87
CCDC88B-201ENST00000301897 SERF2P84101 59 aa9.6□□□□□ -0.87
CCDC88B-201ENST00000301897 RPL36ALQ969Q0 106 aaKnown RBP9.6□□□□□ -0.87
CCDC88B-201ENST00000301897 H3BVH4 76 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 CRPP02741 224 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 PKIAP61925 76 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 FAM74A4Q5TZK3 123 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 HSD17B11Q8NBQ5 300 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 DNAJC30Q96LL9 226 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 ARL2-SNX15V9GYD0 113 aa9.59□□□□□ -0.87
CCDC88B-201ENST00000301897 TRBV7-3A0A075B6L6 115 aa9.58□□□□□ -0.88
CCDC88B-201ENST00000301897 IFNA7P01567 189 aa9.58□□□□□ -0.88
CCDC88B-201ENST00000301897 ARMS2P0C7Q2 107 aa9.58□□□□□ -0.88
CCDC88B-201ENST00000301897 SFRP2Q96HF1 295 aa9.58□□□□□ -0.88
CCDC88B-201ENST00000301897 ACTR3CQ9C0K3 210 aaPredicted RBP9.58□□□□□ -0.88
CCDC88B-201ENST00000301897 PHLDA3Q9Y5J5 127 aa9.58□□□□□ -0.88
CCDC88B-201ENST00000301897 KRBOX1C9JBD0 128 aa9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 TMEM262E9PQX1 116 aa9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 TPT1P13693 172 aaKnown RBP9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 ATP6V0CP27449 155 aa9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 DGAT2L7PQ6IED9 249 aa9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 NKX6-2Q9C056 277 aaPredicted RBP9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 TNFSF18Q9UNG2 199 aa9.57□□□□□ -0.88
CCDC88B-201ENST00000301897 PKHD1L1Q86WI1 4243 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 A0A087WWL8 130 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 TRAV34A0A0B4J273 112 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 UBE2D3P61077 147 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 UBE2D2P62837 147 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 FAM162BQ5T6X4 162 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 Q86TA4 180 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 ZFP82Q8N141 532 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 HIST1H2BAQ96A08 127 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 ZFP30Q9Y2G7 519 aa9.56□□□□□ -0.88
CCDC88B-201ENST00000301897 TRBV6-8A0A0A6YYG3 113 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 USP17L23D6RBM5 183 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 PEX7O00628 323 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 MIAQ16674 131 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 COX8CQ7Z4L0 72 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 OR10G8Q8NGN5 311 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 AQP10Q96PS8 301 aa9.55□□□□□ -0.88
CCDC88B-201ENST00000301897 M0R036 132 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 M0R381 172 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 ANGP03950 147 aaKnown RBP9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 CRIP1P50238 77 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 RPL19P84098 196 aaKnown RBP9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 Q5BKY6 102 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 ENHOQ6UWT2 76 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 C15orf54Q8N8G6 183 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 C9orf163Q8N9P6 203 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 DAZAP1Q96EP5 407 aaKnown RBP9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 ZC2HC1AQ96GY0 325 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 MED28Q9H204 178 aa9.54□□□□□ -0.88
CCDC88B-201ENST00000301897 A0A0D9SG52 128 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 GRIFINA4D1Z8 144 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 SH2D1AO60880 128 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 RAB4BP61018 213 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 TMEM97Q5BJF2 176 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 Q6ZRU5 148 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 FMC1Q96HJ9 113 aa9.53□□□□□ -0.88
CCDC88B-201ENST00000301897 HLA-DQA1P01909 254 aa9.52□□□□□ -0.89
CCDC88B-201ENST00000301897 LINC01559Q495D7 138 aa9.52□□□□□ -0.89
CCDC88B-201ENST00000301897 MPV17L2Q567V2 206 aa9.52□□□□□ -0.89
CCDC88B-201ENST00000301897 CTXND1A0A1B0GTU2 59 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 PRSS1P07477 247 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 GIPP09681 153 aaPredicted RBP9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 HNRNPA3P51991 378 aaKnown RBP9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 UBE2G1P62253 170 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 ZNF726P1Q15940 193 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 ZNF674Q2M3X9 581 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 RGS21Q2M5E4 152 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 CLRN3Q8NCR9 226 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 TCEAL7Q9BRU2 100 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 CHCHD5Q9BSY4 110 aa9.51□□□□□ -0.89
CCDC88B-201ENST00000301897 FAM74A7A6NL05 159 aa9.5□□□□□ -0.89
CCDC88B-201ENST00000301897 UBE2G2P60604 165 aa9.5□□□□□ -0.89
CCDC88B-201ENST00000301897 BORCS7-ASMTA0A0B4J1R7 106 aa9.49□□□□□ -0.89
CCDC88B-201ENST00000301897 TRBV6-1A0A0K0K1D8 114 aa9.49□□□□□ -0.89
CCDC88B-201ENST00000301897 G3V3Q6 166 aa9.49□□□□□ -0.89
CCDC88B-201ENST00000301897 ZNF56Q15929 161 aa9.49□□□□□ -0.89
CCDC88B-201ENST00000301897 NEXN-AS1Q8NBZ9 246 aa9.49□□□□□ -0.89
CCDC88B-201ENST00000301897 PRR34Q9NV39 138 aa9.49□□□□□ -0.89
CCDC88B-201ENST00000301897 TMSB15BA0A087X1C1 80 aa9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 MT1HL1P0DM35 61 aa9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 RPL7L1Q6DKI1 246 aaKnown RBP9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 PRR27Q6MZM9 219 aa9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 SDIM1Q6ZPB5 146 aa9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 RNF185Q96GF1 192 aa9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.48□□□□□ -0.89
CCDC88B-201ENST00000301897 LTAP01374 205 aa9.47□□□□□ -0.89
CCDC88B-201ENST00000301897 CXCL1P09341 107 aa9.47□□□□□ -0.89
CCDC88B-201ENST00000301897 INO80EQ8NBZ0 244 aaPredicted RBP9.47□□□□□ -0.89
CCDC88B-201ENST00000301897 ZNF471Q9BX82 626 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms