RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 F2Z2F3 143 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 CIDEAO60543 219 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 P0DMU3 169 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 FAM231AP0DMU4 169 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 FAM231CP0DMU5 169 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 CTRLP40313 264 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 CT83Q5H943 113 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 UQCC3Q6UW78 93 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 C14orf178Q8N769 122 aaPredicted RBP8.85□□□□□ -0.99
SS18-202ENST00000269138 C15orf54Q8N8G6 183 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 OR10G8Q8NGN5 311 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 PGLYRP4Q96LB8 373 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 Q9UF83 564 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 ICOSQ9Y6W8 199 aa8.85□□□□□ -0.99
SS18-202ENST00000269138 TRBV6-4A0A1B0GX49 114 aa8.84□□□□□ -0.99
SS18-202ENST00000269138 K7EQD1 137 aa8.84□□□□□ -0.99
SS18-202ENST00000269138 NTF3P20783 257 aa8.84□□□□□ -0.99
SS18-202ENST00000269138 CACNG7P62955 275 aa8.84□□□□□ -0.99
SS18-202ENST00000269138 TSKUQ8WUA8 353 aa8.84□□□□□ -0.99
SS18-202ENST00000269138 KIF25-AS1Q9Y6Z4 181 aa8.84□□□□□ -0.99
SS18-202ENST00000269138 SACSQ9NZJ4 4579 aa8.83□□□□□ -1
SS18-202ENST00000269138 TMEM218A2RU14 115 aa8.83□□□□□ -1
SS18-202ENST00000269138 RHODO00212 210 aa8.83□□□□□ -1
SS18-202ENST00000269138 ADCYAP1P18509 176 aa8.83□□□□□ -1
SS18-202ENST00000269138 ESRGQ1W209 222 aa8.83□□□□□ -1
SS18-202ENST00000269138 WDR73Q6P4I2 378 aa8.83□□□□□ -1
SS18-202ENST00000269138 UBE2DNLQ8IWF7 75 aa8.83□□□□□ -1
SS18-202ENST00000269138 LINC00588Q9Y4M8 146 aa8.83□□□□□ -1
SS18-202ENST00000269138 VPS13DQ5THJ4 4388 aa8.82□□□□□ -1
SS18-202ENST00000269138 FOXA3P55318 350 aaPredicted RBP8.82□□□□□ -1
SS18-202ENST00000269138 LINC00315P59091 139 aa8.82□□□□□ -1
SS18-202ENST00000269138 RHOHQ15669 191 aa8.82□□□□□ -1
SS18-202ENST00000269138 MRPL23Q16540 153 aaKnown RBP8.82□□□□□ -1
SS18-202ENST00000269138 PRADC1Q9BSG0 188 aa8.82□□□□□ -1
SS18-202ENST00000269138 CNFNQ9BYD5 112 aa8.82□□□□□ -1
SS18-202ENST00000269138 HIGD1CA8MV81 97 aa8.81□□□□□ -1
SS18-202ENST00000269138 EVI2AP22794 236 aa8.81□□□□□ -1
SS18-202ENST00000269138 TWIST1Q15672 202 aa8.81□□□□□ -1
SS18-202ENST00000269138 RNF212Q495C1 297 aa8.81□□□□□ -1
SS18-202ENST00000269138 AP1S3Q96PC3 154 aa8.81□□□□□ -1
SS18-202ENST00000269138 F8W036 122 aa8.8□□□□□ -1
SS18-202ENST00000269138 SRIP30626 198 aa8.8□□□□□ -1
SS18-202ENST00000269138 CCL18P55774 89 aa8.8□□□□□ -1
SS18-202ENST00000269138 GFRA4Q9GZZ7 299 aa8.8□□□□□ -1
SS18-202ENST00000269138 FAM231BA6NCW3 169 aa8.8□□□□□ -1
SS18-202ENST00000269138 GAGE12JA6NER3 117 aa8.8□□□□□ -1
SS18-202ENST00000269138 F5H697 171 aa8.8□□□□□ -1
SS18-202ENST00000269138 SMIM17P0DL12 118 aa8.8□□□□□ -1
SS18-202ENST00000269138 RAB4BP61018 213 aa8.8□□□□□ -1
SS18-202ENST00000269138 GAGE1Q13065 139 aa8.8□□□□□ -1
SS18-202ENST00000269138 GAGE4Q13068 117 aa8.8□□□□□ -1
SS18-202ENST00000269138 GAGE5Q13069 117 aa8.8□□□□□ -1
SS18-202ENST00000269138 ZNF56Q15929 161 aa8.8□□□□□ -1
SS18-202ENST00000269138 GAGE13Q4V321 117 aa8.8□□□□□ -1
SS18-202ENST00000269138 LYPD5Q6UWN5 251 aa8.8□□□□□ -1
SS18-202ENST00000269138 NEGR1Q7Z3B1 354 aa8.8□□□□□ -1
SS18-202ENST00000269138 NUP35Q8NFH5 326 aa8.8□□□□□ -1
SS18-202ENST00000269138 SMIM27A0A1W2PRY6 76 aa8.79□□□□□ -1
SS18-202ENST00000269138 MGPP08493 103 aa8.79□□□□□ -1
SS18-202ENST00000269138 TRGC1P0CF51 173 aa8.79□□□□□ -1
SS18-202ENST00000269138 PNRC1Q12796 327 aaPredicted RBP8.79□□□□□ -1
SS18-202ENST00000269138 RYR2Q92736 4967 aa8.78□□□□□ -1
SS18-202ENST00000269138 IGLV2-18A0A075B6J9 118 aa8.78□□□□□ -1
SS18-202ENST00000269138 A0A1B0GUT8 65 aa8.78□□□□□ -1
SS18-202ENST00000269138 LINC00694P0DN24 101 aa8.78□□□□□ -1
SS18-202ENST00000269138 ZNRF2Q8NHG8 242 aa8.78□□□□□ -1
SS18-202ENST00000269138 SEC11CQ9BY50 192 aa8.78□□□□□ -1
SS18-202ENST00000269138 DPH3P1Q9H4G8 78 aa8.78□□□□□ -1
SS18-202ENST00000269138 NAT8BQ9UHF3 227 aa8.77□□□□□ -1.01
SS18-202ENST00000269138 MRPS16Q9Y3D3 137 aaKnown RBP8.77□□□□□ -1.01
SS18-202ENST00000269138 HYDINQ4G0P3 5121 aa8.76□□□□□ -1.01
SS18-202ENST00000269138 SUMO4Q6EEV6 95 aa8.76□□□□□ -1.01
SS18-202ENST00000269138 NEXN-AS1Q8NBZ9 246 aa8.76□□□□□ -1.01
SS18-202ENST00000269138 ATP6V0E2Q8NHE4 81 aa8.76□□□□□ -1.01
SS18-202ENST00000269138 BORCS7Q96B45 105 aa8.76□□□□□ -1.01
SS18-202ENST00000269138 TRBV10-1A0A0K0K1A3 114 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 M0QY20 66 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 M0R2N4 97 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 PPP1R2P9O14990 202 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 MT-ND4LP03901 98 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 FAM3BP58499 235 aaPredicted RBP8.75□□□□□ -1.01
SS18-202ENST00000269138 C10orf91Q5T1B1 145 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 SH2D6Q7Z4S9 175 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 KMT2AQ03164 3969 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 RYR3Q15413 4870 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 RIGQ13278 110 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 SMIM15Q7Z3B0 74 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 ANAPC16Q96DE5 110 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 UPK3BQ9BT76 320 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 Q9H8V8 135 aa8.75□□□□□ -1.01
SS18-202ENST00000269138 TRAV26-2A0A0B4J265 109 aa8.74□□□□□ -1.01
SS18-202ENST00000269138 UBE2D3P61077 147 aa8.74□□□□□ -1.01
SS18-202ENST00000269138 UBE2D2P62837 147 aa8.74□□□□□ -1.01
SS18-202ENST00000269138 RPL36AP83881 106 aaKnown RBP8.74□□□□□ -1.01
SS18-202ENST00000269138 GATD1Q8NB37 220 aa8.74□□□□□ -1.01
SS18-202ENST00000269138 RPL36ALQ969Q0 106 aaKnown RBP8.74□□□□□ -1.01
SS18-202ENST00000269138 GTSF1LQ9H1H1 148 aa8.74□□□□□ -1.01
SS18-202ENST00000269138 CARHSP1Q9Y2V2 147 aaKnown RBP8.74□□□□□ -1.01
SS18-202ENST00000269138 TRBV7-3A0A075B6L6 115 aa8.73□□□□□ -1.01
SS18-202ENST00000269138 TIRAPP58753 221 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 205 ms