RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 WDR87Q6ZQQ6 2873 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 Q8TAT8 98 aa6.11□□□□□ -1.43
USP3-201ENST00000268049 A0A0G2JRQ6 117 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 MRPL51Q4U2R6 128 aaKnown RBP6.1□□□□□ -1.43
USP3-201ENST00000268049 Q6P435 159 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 C16orf54Q6UWD8 224 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 F6UB75 175 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 BAALC-AS2P0C853 105 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 RPL18AQ02543 176 aaKnown RBP6.1□□□□□ -1.43
USP3-201ENST00000268049 DSCR8Q96T75 97 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 DNAH12Q6ZR08 3092 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 IGHV4OR15-8A0A075B7B6 117 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 A0A087WW49 117 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 LYRM9A8MSI8 78 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 PSMB8P28062 276 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 QRFPP83859 136 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 K7EMT4 169 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 PTH2Q96A98 100 aa6.1□□□□□ -1.43
USP3-201ENST00000268049 J3QQQ9 107 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 UQCRQO14949 82 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 MT-ATP8P03928 68 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 SHANK2-AS3Q9BTD1 123 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 IGKV3D-7A0A0C4DH55 119 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 RNASE2P10153 161 aaKnown RBP6.09□□□□□ -1.43
USP3-201ENST00000268049 Q6ZRM9 215 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 DOCK11Q5JSL3 2073 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 FXYD2P54710 66 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 MYO18BQ8IUG5 2567 aa6.09□□□□□ -1.43
USP3-201ENST00000268049 LRP4O75096 1905 aa6.09□□□□□ -1.44
USP3-201ENST00000268049 RSPO1Q2MKA7 263 aaPredicted RBP6.09□□□□□ -1.44
USP3-201ENST00000268049 C20orf78Q9BR46 151 aa6.09□□□□□ -1.44
USP3-201ENST00000268049 SPANXB1Q9NS25 103 aaPredicted RBP6.09□□□□□ -1.44
USP3-201ENST00000268049 COL4A2P08572 1712 aa6.09□□□□□ -1.44
USP3-201ENST00000268049 PCNTO95613 3336 aa6.09□□□□□ -1.44
USP3-201ENST00000268049 A0A096LPF7 62 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 TRAV13-2A0A0B4J235 113 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 LINC01620Q4KN68 170 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 ZNRF2Q8NHG8 242 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 HIVEP2P31629 2446 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 FAM240AA0A1B0GVK7 77 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 EGR2P11161 476 aaPredicted RBP6.08□□□□□ -1.44
USP3-201ENST00000268049 C5orf56Q8N8D9 126 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 TMEM75Q8N9X5 138 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 C2orf70A6NJV1 201 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 LINC01545Q5VT33 79 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 Q6ZSV7 163 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 C11orf52Q96A22 123 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 SIRPDQ9H106 197 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 TNRC6AQ8NDV7 1962 aaKnown RBP6.08□□□□□ -1.44
USP3-201ENST00000268049 ATG2AQ2TAZ0 1938 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 IGHV3-30P01768 117 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 IGHV3-33P01772 117 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 IGHV3-30-3P0DP02 117 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 IGHV3-30-5P0DP03 117 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 WFDC9Q8NEX5 89 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 NPBQ8NG41 125 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 SPATA3Q8NHX4 192 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 B9D2Q9BPU9 175 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 DOPEY2Q9Y3R5 2298 aa6.08□□□□□ -1.44
USP3-201ENST00000268049 C1orf195Q5TG92 126 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 HIGD1BQ9P298 99 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 KLK9Q9UKQ9 250 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 ZNF134P52741 427 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 WDR86Q86TI4 376 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 CAMK2N2Q96S95 79 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 CHD3Q12873 2000 aaKnown RBP6.07□□□□□ -1.44
USP3-201ENST00000268049 CRYGBP07316 175 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 CFPP27918 469 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 SPTSSBQ8NFR3 76 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 EML5Q05BV3 1969 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 M0QXV9 152 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 BLCAPP62952 87 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 NAV2Q8IVL1 2488 aa6.07□□□□□ -1.44
USP3-201ENST00000268049 Q6ZS49 121 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 ZNF491Q8N8L2 437 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 MRPL53Q96EL3 112 aaKnown RBP6.06□□□□□ -1.44
USP3-201ENST00000268049 CCDC168Q8NDH2 2452 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 MALRD1Q5VYJ5 2156 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 hADV29S1A0JD25 119 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 BUB3O43684 328 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 HERVK_113P63121 156 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 CSPG4Q6UVK1 2322 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 ETDCA0A1B0GVM5 59 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 ABCA1O95477 2261 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 A0A087WWL8 130 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 K7EN84 100 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 BBC3Q96PG8 261 aaPredicted RBP6.06□□□□□ -1.44
USP3-201ENST00000268049 LMO4P61968 165 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 C3orf22Q8N5N4 141 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 GTSF1Q8WW33 167 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 C20orf173Q96LM9 149 aa6.06□□□□□ -1.44
USP3-201ENST00000268049 FAM236DA0A1B0GTK5 79 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 FAM236CP0DP71 79 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 APRG1Q8IVJ8 170 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 IGHV3-16A0A0C4DH30 117 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 I3L3M4 83 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 FSTL3O95633 263 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 MUSTN1Q8IVN3 82 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 ORMDL1Q9P0S3 153 aa6.05□□□□□ -1.44
USP3-201ENST00000268049 CTSZQ9UBR2 303 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms