RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PRSS29PA6NIE9 313 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 B5MCH6 92 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 SLC25A16P16260 332 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 Q6ZS46 218 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 PRADC1Q9BSG0 188 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 ZMAT4Q9H898 229 aa9.6□□□□□ -0.87
LIG1-201ENST00000263274 EDN2P20800 178 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 FOXI2Q6ZQN5 318 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 ZNF418Q8TF45 676 aaPredicted RBP9.59□□□□□ -0.87
LIG1-201ENST00000263274 FAM110AQ9BQ89 295 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 HIGD1BQ9P298 99 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 MYO9AB2RTY4 2548 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 C19orf84I3L1E1 186 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 MT-ATP8P03928 68 aa9.59□□□□□ -0.87
LIG1-201ENST00000263274 DUSP14O95147 198 aaKnown RBP9.58□□□□□ -0.88
LIG1-201ENST00000263274 ZNF688P0C7X2 276 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 ZFAND2AQ8N6M9 145 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 AJUBAQ96IF1 538 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 IGHV3-64A0A075B6Q5 118 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 TRAV12-2A0A075B6T6 113 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 OVOL1O14753 267 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 HLA-DRB4P13762 266 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 HLA-DRB4X5D2U9 266 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 MYMXA0A1B0GTQ4 84 aa9.58□□□□□ -0.88
LIG1-201ENST00000263274 HOXA3O43365 443 aaPredicted RBP9.58□□□□□ -0.88
LIG1-201ENST00000263274 RPL39P62891 51 aaKnown RBP9.58□□□□□ -0.88
LIG1-201ENST00000263274 BBC3Q96PG8 261 aaPredicted RBP9.58□□□□□ -0.88
LIG1-201ENST00000263274 IGHV1-69DA0A0B4J2H0 117 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 IGHV4-61A0A0C4DH41 118 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 IGHV1-69P01742 117 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 GNLYP22749 145 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 PSMG4Q5JS54 123 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 TP53TG1Q9Y2A0 90 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 H7C2G1 150 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 DUX5Q96PT3 197 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 WNK1Q9H4A3 2382 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 FAM223BA6NKX1 122 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 IGHV4-39P01824 125 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 ZNF56Q15929 161 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 FAM223AQ8IWN6 122 aa9.57□□□□□ -0.88
LIG1-201ENST00000263274 LINC01549A6NIU2 74 aa9.56□□□□□ -0.88
LIG1-201ENST00000263274 PSMB2P49721 201 aa9.56□□□□□ -0.88
LIG1-201ENST00000263274 BAALCQ8WXS3 180 aa9.56□□□□□ -0.88
LIG1-201ENST00000263274 RPL32P62910 135 aaKnown RBP9.56□□□□□ -0.88
LIG1-201ENST00000263274 TM2D2Q9BX73 214 aa9.56□□□□□ -0.88
LIG1-201ENST00000263274 SCGB1C2P0DMR2 95 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 MRPL53Q96EL3 112 aaKnown RBP9.55□□□□□ -0.88
LIG1-201ENST00000263274 KIR2DL4Q99706 377 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 PLEKHB2Q96CS7 222 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 VCX2Q9H322 139 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 PRORYQ9H606 182 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 NDUFA4O00483 81 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 GPHB5Q86YW7 130 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 U3KQE9 123 aa9.55□□□□□ -0.88
LIG1-201ENST00000263274 PSMG3-AS1Q96PY0 264 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 KLK9Q9UKQ9 250 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 E9PLD3 99 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 LGALS1P09382 135 aaKnown RBP9.54□□□□□ -0.88
LIG1-201ENST00000263274 PTH2Q96A98 100 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 TOMM6Q96B49 74 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 ABCA2Q9BZC7 2435 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 IGHV3-73A0A0B4J1V6 119 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 MAPK1IP1LQ8NDC0 245 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 PIMREGQ9BSJ6 248 aa9.54□□□□□ -0.88
LIG1-201ENST00000263274 RNASE3P12724 160 aaKnown RBP9.53□□□□□ -0.88
LIG1-201ENST00000263274 HERVK_113P61574 105 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 FOXI1Q12951 378 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 RRN3P1Q2M238 152 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 PIFOQ8TCI5 191 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 PHLDA1Q8WV24 401 aaPredicted RBP9.53□□□□□ -0.88
LIG1-201ENST00000263274 OPRPNQ99935 248 aaPredicted RBP9.53□□□□□ -0.88
LIG1-201ENST00000263274 TSPAN13O95857 204 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 XGP55808 180 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 NEXN-AS1Q8NBZ9 246 aa9.53□□□□□ -0.88
LIG1-201ENST00000263274 ITLN2Q8WWU7 325 aaPredicted RBP9.53□□□□□ -0.88
LIG1-201ENST00000263274 SDHAF1A6NFY7 115 aa9.52□□□□□ -0.88
LIG1-201ENST00000263274 C11orf86A6NJI1 115 aa9.52□□□□□ -0.88
LIG1-201ENST00000263274 C10orf99Q6UWK7 81 aa9.52□□□□□ -0.88
LIG1-201ENST00000263274 CCL19Q99731 98 aa9.52□□□□□ -0.88
LIG1-201ENST00000263274 DAZ1Q9NQZ3 744 aaKnown RBP9.52□□□□□ -0.88
LIG1-201ENST00000263274 ZFHX3Q15911 3703 aa9.52□□□□□ -0.88
LIG1-201ENST00000263274 MUC4Q99102 2169 aa9.52□□□□□ -0.89
LIG1-201ENST00000263274 SPINK13Q1W4C9 94 aa9.52□□□□□ -0.89
LIG1-201ENST00000263274 Q6ZUT4 128 aa9.52□□□□□ -0.89
LIG1-201ENST00000263274 GCN1Q92616 2671 aaKnown RBP9.51□□□□□ -0.89
LIG1-201ENST00000263274 GAGE5Q13069 117 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 GAGE6Q13070 117 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 NRGNQ92686 78 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 LENEPQ9Y5L5 61 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 IGHV4-4A0A075B6R2 117 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 LINC01546A6NGU7 62 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 SUMO4Q6EEV6 95 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 TEX29Q8N6K0 151 aa9.51□□□□□ -0.89
LIG1-201ENST00000263274 TRAV12-1A0A0B4J245 112 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 TRBV20-1A0A075B6N2 111 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 USMG5Q96IX5 58 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 MDFICQ9P1T7 246 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 ERG28Q9UKR5 140 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 VPS13CQ709C8 3753 aa9.5□□□□□ -0.89
LIG1-201ENST00000263274 IGHV4-30-2A0A087WSY4 118 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms