RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NACAE9PAV3 2078 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 IGHV3-30P01768 117 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 IGHV3-30-5P0DP03 117 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 METTL26Q96S19 204 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 DPH3P1Q9H4G8 78 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 ZFAND3Q9H8U3 227 aa10.88□□□□□ -0.67
SDC1-201ENST00000254351 IGLV4-69A0A075B6H9 119 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 HERVK_113P61574 105 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 CD3EP07766 207 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 ASIPP42127 132 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 FAM159AQ6UWV7 190 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 VMO1Q7Z5L0 202 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 CCDC140Q96MF4 163 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 NDUFV3P56181 108 aaKnown RBP10.87□□□□□ -0.67
SDC1-201ENST00000254351 RNASE13Q5GAN3 156 aaKnown RBP10.87□□□□□ -0.67
SDC1-201ENST00000254351 LYRM7Q5U5X0 104 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 NPBQ8NG41 125 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 LINC00477Q96M19 166 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 RNF5Q99942 180 aa10.87□□□□□ -0.67
SDC1-201ENST00000254351 IGHV3-11P01762 117 aa10.86□□□□□ -0.67
SDC1-201ENST00000254351 Q8N1Y9 231 aa10.86□□□□□ -0.67
SDC1-201ENST00000254351 MUSTN1Q8IVN3 82 aa10.86□□□□□ -0.67
SDC1-201ENST00000254351 MUC4Q99102 2169 aa10.85□□□□□ -0.67
SDC1-201ENST00000254351 J3QQQ9 107 aa10.85□□□□□ -0.67
SDC1-201ENST00000254351 EIF4EBP3O60516 100 aaPredicted RBP10.85□□□□□ -0.67
SDC1-201ENST00000254351 TIMD4Q96H15 378 aa10.85□□□□□ -0.67
SDC1-201ENST00000254351 PTPRQQ9UMZ3 2332 aa10.85□□□□□ -0.67
SDC1-201ENST00000254351 RNF223E7ERA6 249 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 TRBV12-3P01733 135 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 C15orf53Q8NAA6 179 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 IGF2RP11717 2491 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 GAGE12JA6NER3 117 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 GAGE7O76087 117 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 GAGE12FP0CL80 117 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 GAGE12GP0CL81 117 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 GAGE12IP0CL82 117 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 SRSF2Q01130 221 aaKnown RBP10.84□□□□□ -0.67
SDC1-201ENST00000254351 GAGE4Q13068 117 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 UNQ9165/PRO28630Q6UXU0 137 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 HTN1P15515 57 aa10.84□□□□□ -0.67
SDC1-201ENST00000254351 NCOR2Q9Y618 2525 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 B9A039 149 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 IFITM1P13164 125 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 PMVKQ15126 192 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 DUX3Q96PT4 197 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 CACNA1AO00555 2505 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 SPXQ9BT56 116 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 CSPG4Q6UVK1 2322 aa10.83□□□□□ -0.68
SDC1-201ENST00000254351 RBAKDNA6NC62 111 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 A8MZ25 164 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 SLC25A29Q8N8R3 303 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 Q8N9W7 124 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 OR10J6PQ8NGY7 276 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 TRBV7-9A0A0J9YWB2 115 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 TMEM262E9PQX1 116 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 GPHB5Q86YW7 130 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 CHCHD5Q9BSY4 110 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 TRAV8-4A0A0B4J246 113 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 SDHAF1A6NFY7 115 aa10.82□□□□□ -0.68
SDC1-201ENST00000254351 ZNF56Q15929 161 aa10.81□□□□□ -0.68
SDC1-201ENST00000254351 ZFAND2AQ8N6M9 145 aa10.81□□□□□ -0.68
SDC1-201ENST00000254351 CITED1Q99966 193 aa10.81□□□□□ -0.68
SDC1-201ENST00000254351 RHODO00212 210 aa10.81□□□□□ -0.68
SDC1-201ENST00000254351 CLEC2BQ92478 149 aa10.81□□□□□ -0.68
SDC1-201ENST00000254351 VCX2Q9H322 139 aa10.81□□□□□ -0.68
SDC1-201ENST00000254351 IGHV3-73A0A0B4J1V6 119 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 TRAV21A0A0B4J279 112 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 A0A0U1RRA0 63 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 IGHV3-33P01772 117 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 ZFP36P26651 326 aaKnown RBP10.8□□□□□ -0.68
SDC1-201ENST00000254351 CEMP1Q6PRD7 247 aaPredicted RBP10.8□□□□□ -0.68
SDC1-201ENST00000254351 C9orf47Q6ZRZ4 202 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 DAND5Q8N907 189 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 TRAV12-3A0A0B4J271 114 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 RNASE3P12724 160 aaKnown RBP10.8□□□□□ -0.68
SDC1-201ENST00000254351 EDN2P20800 178 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 SUMO4Q6EEV6 95 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 Q8NA96 180 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 TRAV12-2A0A075B6T6 113 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 A0A0J9YXV3 536 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 LINC01619G3V211 115 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 RPL32P62910 135 aaKnown RBP10.8□□□□□ -0.68
SDC1-201ENST00000254351 UBTD1Q9HAC8 227 aa10.8□□□□□ -0.68
SDC1-201ENST00000254351 TRAV8-3A0A0A6YYJ7 113 aa10.79□□□□□ -0.68
SDC1-201ENST00000254351 IGIPA6NJ69 53 aa10.79□□□□□ -0.68
SDC1-201ENST00000254351 LINC01620Q4KN68 170 aa10.79□□□□□ -0.68
SDC1-201ENST00000254351 MEIG1Q5JSS6 88 aa10.79□□□□□ -0.68
SDC1-201ENST00000254351 C2orf82Q6UX34 121 aa10.79□□□□□ -0.68
SDC1-201ENST00000254351 TRIAP1O43715 76 aa10.78□□□□□ -0.68
SDC1-201ENST00000254351 IGHV4-4A0A075B6R2 117 aa10.78□□□□□ -0.68
SDC1-201ENST00000254351 EEF1AKMT3Q96AZ1 226 aa10.78□□□□□ -0.68
SDC1-201ENST00000254351 ODF3Q96PU9 254 aa10.78□□□□□ -0.68
SDC1-201ENST00000254351 TMEM263Q8WUH6 116 aaKnown RBP10.77□□□□□ -0.69
SDC1-201ENST00000254351 TMEM190Q8WZ59 177 aa10.77□□□□□ -0.69
SDC1-201ENST00000254351 PRRC2AP48634 2157 aaKnown RBP10.76□□□□□ -0.69
SDC1-201ENST00000254351 ODF3BA8MYP8 253 aa10.76□□□□□ -0.69
SDC1-201ENST00000254351 LY6G5BQ8NDX9 201 aa10.76□□□□□ -0.69
SDC1-201ENST00000254351 FAM110DQ8TAY7 271 aaPredicted RBP10.76□□□□□ -0.69
SDC1-201ENST00000254351 AMELXQ99217 191 aa10.76□□□□□ -0.69
SDC1-201ENST00000254351 PRORYQ9H606 182 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms