RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TMEM158Q8WZ71 300 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 ARHGAP5-AS1Q96IT6 56 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 ROBO1Q9Y6N7 1651 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 IGHV1OR15-1A0A075B7D0 117 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 SERF2P84101 59 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 FAM208AQ9UK61 1670 aaKnown RBP2.75□□□□□ -1.97
SCN1A-221ENST00000641996 RPS11P62280 158 aaKnown RBP eCLIP2.75□□□□□ -1.97
SCN1A-221ENST00000641996 FOXF1Q12946 379 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 SPRNQ5BIV9 151 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 Q96M85 177 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 IGHV3-64A0A075B6Q5 118 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 IGLV9-49A0A0B4J1Y8 123 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 SOCS3O14543 225 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 NDUFC1O43677 76 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 SETBP1Q9Y6X0 1596 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV10-2A0A0K0K1G8 114 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 HCG22E2RYF7 251 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 PPP1R17O96001 155 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 CEMP1Q6PRD7 247 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-221ENST00000641996 HAMPP81172 84 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 GPHB5Q86YW7 130 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 PPYP01298 95 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 IGHV1-69P01742 117 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 TRGV3P03979 118 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 SP7Q8TDD2 431 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-221ENST00000641996 ODF3Q96PU9 254 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 GNB1P62873 340 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 STRCP1A6NGW2 1772 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 IGFBP7Q16270 282 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 TIAM2Q8IVF5 1701 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 DSCR4P56555 118 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-221ENST00000641996 PRAC1Q96KF2 57 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 ESRGQ1W209 222 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 hDV103S1A0JD37 113 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 Q6ZSV7 163 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 Q8N6K4 173 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 MRPL35Q9NZE8 188 aaKnown RBP2.74□□□□□ -1.97
SCN1A-221ENST00000641996 TMEM14AQ9Y6G1 99 aa2.74□□□□□ -1.97
SCN1A-221ENST00000641996 MIFP14174 115 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 ENHOQ6UWT2 76 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 UNQ9165/PRO28630Q6UXU0 137 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV25-1A0A075B6N4 114 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV7-1A0A0A6YYK4 115 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 CEP170Q5SW79 1584 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 C3P01024 1663 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 RPL27AP46776 148 aaKnown RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TFF3Q07654 80 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 DISP1Q96F81 1524 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 FGF23Q9GZV9 251 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 ITPR2Q14571 2701 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 DSPP15924 2871 aaKnown RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 SEC61BP60468 96 aaKnown RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 SPACA3Q8IXA5 215 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 UBL5Q9BZL1 73 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TMEM167BQ9NRX6 74 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 ORMDL1Q9P0S3 153 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 SETXQ7Z333 2677 aaKnown RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV5-7A0A0A0MS05 114 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 WFDC6Q9BQY6 131 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 M0R378 163 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 GFRALQ6UXV0 394 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TEX15Q9BXT5 2789 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 CDC42BPGQ6DT37 1551 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV7-7A0A0K0K1E9 115 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 CFC1BP0CG36 223 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 CFC1P0CG37 223 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 ZNF22P17026 224 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 ZNF32P17041 273 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 RSPO1Q2MKA7 263 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 MRPL51Q4U2R6 128 aaKnown RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 MAPKAPK5-AS1Q8N8E1 139 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TMEM133Q9H2Q1 129 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 ICOSQ9Y6W8 199 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 CICQ96RK0 1608 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 IGLV3-10A0A075B6K4 115 aa2.73□□□□□ -1.97
SCN1A-221ENST00000641996 TNFRSF13BO14836 293 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-221ENST00000641996 RPS27P42677 84 aaKnown RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 C19orf48Q6RUI8 117 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 PAQR4Q8N4S7 273 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 LMO7Q8WWI1 1683 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 BCORQ6W2J9 1755 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 A0A087WVE0 104 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 SUPT4H1P63272 117 aaKnown RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 PLCH1Q4KWH8 1693 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 GNLYP22749 145 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 MAP3K4Q9Y6R4 1608 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 IGKV6D-21A0A0A0MT36 114 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 TRAV40A0A0B4J280 105 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 CXCL8P10145 99 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 XCL1P47992 114 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 PRR3P79522 188 aaKnown RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 XCL2Q9UBD3 114 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 LY96Q9Y6Y9 160 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 ITPR3Q14573 2671 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV5-5A0A0J9YX44 114 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 RMI2Q96E14 147 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 OPRPNQ99935 248 aaPredicted RBP2.72□□□□□ -1.97
SCN1A-221ENST00000641996 FAM74A4Q5TZK3 123 aa2.72□□□□□ -1.97
SCN1A-221ENST00000641996 PIFOQ8TCI5 191 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms