RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 ADAMTSL5Q6ZMM2 481 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF833PQ6ZTB9 187 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 FOXL2NBQ6ZUU3 175 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 ZNRF2Q8NHG8 242 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 TRAV8-3A0A0A6YYJ7 113 aa3.95□□□□□ -1.78
SCN1A-218ENST00000640036 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-5P01602 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 VPREB1P12018 145 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 LINC00479Q96M42 142 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 FAM110AQ9BQ89 295 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 TMEM242Q9NWH2 141 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV1-24A0A0C4DH33 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-16P04430 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 KRTAP10-9P60411 292 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 RPL18AQ02543 176 aaKnown RBP3.94□□□□□ -1.78
SCN1A-218ENST00000640036 CASC2Q6XLA1 102 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF114Q8NC26 417 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 SVIPQ8NHG7 77 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 PPDPFLQ8WWR9 84 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF319Q9P2F9 582 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 DEFB4AO15263 64 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 CXCL2P19875 107 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 PRIMA1Q86XR5 153 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 CTSZQ9UBR2 303 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 A0A1W2PRE2 83 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 hDV102S1A0JD36 115 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 A6NDX4 124 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 Q0VG73 95 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 HHLA3Q9XRX5 114 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF106Q9H2Y7 1883 aaKnown RBP3.94□□□□□ -1.78
SCN1A-218ENST00000640036 ETV2O00321 342 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-218ENST00000640036 TAL2Q16559 108 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 KLK9Q9UKQ9 250 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 U3KQE9 123 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-9A0A0C4DH69 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 MUC21A0A0G2JKD1 596 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 MUC21A0A140T8X8 626 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 A8MXK9 166 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 NDUFC1O43677 76 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV3-30P01768 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV3-33P01772 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 SPINK8P0C7L1 97 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV3-30-3P0DP02 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV3-30-5P0DP03 117 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 WWC2-AS2Q96NR7 200 aa3.94□□□□□ -1.78
SCN1A-218ENST00000640036 TRAV12-2A0A075B6T6 113 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 AURKAIP1Q9NWT8 199 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-218ENST00000640036 CCL20P78556 96 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 HERV-K104P63124 156 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 C5orf47Q569G3 176 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 C9orf47Q6ZRZ4 202 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 ESM1Q9NQ30 184 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 TRBV6-6A0A0A6YYG2 114 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 FNDC10F2Z333 226 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 KLHDC3Q9BQ90 382 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 K7EMT4 169 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 C18orf15Q96N68 181 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 F8VVB4 439 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 F8VWA3 439 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 HERVK_113P63121 156 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 MIXL1Q9H2W2 232 aa3.93□□□□□ -1.78
SCN1A-218ENST00000640036 CXCL5P42830 114 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-12A0A0C4DH73 117 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 WIPF3A6NGB9 483 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 MIR17HGQ75NE6 70 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 SIRPDQ9H106 197 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 PRSS29PA6NIE9 313 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 H3BUT2 72 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 J3KT08 172 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 NCR2O95944 276 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-39P01597 117 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1D-39P04432 117 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 LYPD6Q86Y78 171 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 MUSTN1Q8IVN3 82 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 MRPL53Q96EL3 112 aaKnown RBP3.92□□□□□ -1.78
SCN1A-218ENST00000640036 GFRA4Q9GZZ7 299 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 PRO0255Q9UI72 69 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1D-13A0A0B4J2D9 117 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 IGKV1-13P0DP09 117 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 C17orf58Q2M2W7 97 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 Q6ZQT7 251 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF491Q8N8L2 437 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 CAMK2N2Q96S95 79 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 GSN-AS1Q9NRJ2 163 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 CRYGDP07320 174 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 TDRG1Q3Y452 100 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 CLPSL2Q6UWE3 100 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 Q8N9W7 124 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 TIMM17AQ99595 171 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 MRPL36Q9P0J6 103 aaKnown RBP3.92□□□□□ -1.78
SCN1A-218ENST00000640036 LRP4O75096 1905 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 H0YGX0 51 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 J3QL48 77 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 CCDC140Q96MF4 163 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 PNRC2Q9NPJ4 139 aaKnown RBP3.92□□□□□ -1.78
SCN1A-218ENST00000640036 ZNF295-AS1Q8N0V1 137 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 EXOC3-AS1Q8N2X6 119 aa3.92□□□□□ -1.78
SCN1A-218ENST00000640036 FAM229AH3BQW9 127 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 ORMDL1Q9P0S3 153 aa3.91□□□□□ -1.78
SCN1A-218ENST00000640036 IGHV7-81A0A0B4J1V7 117 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms