RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PSPNO60542 156 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 LIFP15018 202 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 SPINK14Q6IE38 97 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 C5orf38Q86SI9 138 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 TOMM6Q96B49 74 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 PTPRSQ13332 1948 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 MUC6Q6W4X9 2439 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 TRAV26-2A0A0B4J265 109 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 NDUFC1O43677 76 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 KHDC1LQ5JSQ8 128 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 THAP8Q8NA92 274 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 NEXN-AS1Q8NBZ9 246 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 ABCA1O95477 2261 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 C11orf86A6NJI1 115 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 COL8A2P25067 703 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 RPL27AP46776 148 aaKnown RBP4.43□□□□□ -1.7
SCN1A-216ENST00000637968 FAM216BQ8N7L0 139 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 DCTN5Q9BTE1 182 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 PHLDA3Q9Y5J5 127 aa4.43□□□□□ -1.7
SCN1A-216ENST00000637968 TRAV23DV6A0A075B6W5 121 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 NTN3O00634 580 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-216ENST00000637968 GP9P14770 177 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 DEFB121Q5J5C9 76 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 FAM223AQ8IWN6 122 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 DYNLRB2Q8TF09 96 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 LEAP2Q969E1 77 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 ZNF407Q9C0G0 2248 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 IGKV3D-11A0A0A0MRZ8 115 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 SAA2P0DJI9 122 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-216ENST00000637968 XCL1P47992 114 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 BRWD1-AS2P59051 145 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 UBL5Q9BZL1 73 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 XCL2Q9UBD3 114 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 IGKV2-40A0A087WW87 121 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-216ENST00000637968 M0R381 172 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 IGKV2D-40P01614 121 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-216ENST00000637968 PRB4P10163 310 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-216ENST00000637968 ZNF826PQ6ZT77 177 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 MSRB1Q9NZV6 116 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 IGHV1-69DA0A0B4J2H0 117 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 K7ENP7 123 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 EGR2P11161 476 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-216ENST00000637968 CD59P13987 128 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 Q6ZS46 218 aa4.42□□□□□ -1.7
SCN1A-216ENST00000637968 I3L3M4 83 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 BUB3O43684 328 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 SS18L1O75177 396 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-216ENST00000637968 ZNF134P52741 427 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 FAM110DQ8TAY7 271 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-216ENST00000637968 RNF138Q8WVD3 245 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 CCL17Q92583 94 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 TMEM223A0PJW6 202 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 NXPH4O95158 308 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 APELAP0DMC3 54 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 COX7A1P24310 79 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 EIF4EBP1Q13541 118 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-216ENST00000637968 ATP5EP2Q5VTU8 51 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 DGAT2L7PQ6IED9 249 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 TRBV7-6A0A0J9YX20 115 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 PDE6HQ13956 83 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 Q8TAT8 98 aa4.41□□□□□ -1.7
SCN1A-216ENST00000637968 IGLV3-32A0A0A0MS00 114 aa4.4□□□□□ -1.7
SCN1A-216ENST00000637968 IGHV1-45A0A0A0MS14 117 aa4.4□□□□□ -1.7
SCN1A-216ENST00000637968 TMEM131Q92545 1883 aa4.4□□□□□ -1.7
SCN1A-216ENST00000637968 A0A087WVE0 104 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 SDHAF1A6NFY7 115 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 LOXP28300 417 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-216ENST00000637968 C9orf139Q6ZV77 190 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 RNF185Q96GF1 192 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 SRXN1Q9BYN0 137 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 COX7A2LO14548 114 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 PVRIGQ6DKI7 326 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 FGF23Q9GZV9 251 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-216ENST00000637968 NDUFA12Q9UI09 145 aa4.4□□□□□ -1.71
SCN1A-216ENST00000637968 FAM223BA6NKX1 122 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 F8WEM9 126 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 VCYO14598 125 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 PAX8Q06710 450 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 TMEM30BQ3MIR4 351 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 LY6G5BQ8NDX9 201 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 C17orf77Q96MU5 243 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 TTTY12Q9BZ98 90 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 NDUFA4L2Q9NRX3 87 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 CCL3P10147 92 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 FHL2Q14192 279 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 CDSNQ15517 529 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 ZGRF1Q86YA3 2104 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 ZNF625Q96I27 306 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-216ENST00000637968 PLAC8L1A1L4L8 177 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 UBE2L6O14933 153 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 OXTP01178 125 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 DAZAP2Q15038 168 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-216ENST00000637968 PIEZO1Q92508 2521 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 LINC01546A6NGU7 62 aa4.39□□□□□ -1.71
SCN1A-216ENST00000637968 PAX4O43316 350 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 BLCAPP62952 87 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 NDPQ00604 133 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 CFHR1Q03591 330 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 SOSTDC1Q6X4U4 206 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 639.6 ms