RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 GNRH2O43555 120 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 PRR27Q6MZM9 219 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 KCNS1Q96KK3 526 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 SDF2L1Q9HCN8 221 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 TRGV11A0A075B6L2 103 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 A0A0J9YY99 117 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 TYMSP04818 313 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 PEA15Q15121 130 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 SMIM12Q96EX1 92 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 VSIG2Q96IQ7 327 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 MDFICQ9P1T7 246 aa13.37□□□□□ -0.27
CLN3-260ENST00000637578 IGKV3D-20A0A0C4DH25 116 aa13.36□□□□□ -0.27
CLN3-260ENST00000637578 A0A1B0GVY2 172 aa13.36□□□□□ -0.27
CLN3-260ENST00000637578 C9JCJ5 164 aa13.36□□□□□ -0.27
CLN3-260ENST00000637578 MGST1P10620 155 aaKnown RBP13.36□□□□□ -0.27
CLN3-260ENST00000637578 ZNF415Q09FC8 603 aa13.36□□□□□ -0.27
CLN3-260ENST00000637578 IGHV3-16A0A0C4DH30 117 aa13.35□□□□□ -0.27
CLN3-260ENST00000637578 M0R036 132 aa13.35□□□□□ -0.27
CLN3-260ENST00000637578 ORM1P02763 201 aa13.35□□□□□ -0.27
CLN3-260ENST00000637578 SMDT1Q9H4I9 107 aa13.35□□□□□ -0.27
CLN3-260ENST00000637578 MUC4Q99102 2169 aa13.34□□□□□ -0.27
CLN3-260ENST00000637578 SMIM7Q9BQ49 75 aa13.34□□□□□ -0.27
CLN3-260ENST00000637578 MRPL16Q9NX20 251 aaKnown RBP13.34□□□□□ -0.27
CLN3-260ENST00000637578 B4DEV8 164 aa13.33□□□□□ -0.28
CLN3-260ENST00000637578 LINC01559Q495D7 138 aa13.33□□□□□ -0.28
CLN3-260ENST00000637578 RASL10AQ92737 203 aa13.33□□□□□ -0.28
CLN3-260ENST00000637578 KRBOX1C9JBD0 128 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 ESRGQ1W209 222 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 OCC1Q8TAD7 63 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 SPXQ9BT56 116 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 TMSB15BA0A087X1C1 80 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 NBDYA0A0U1RRE5 68 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 PRSS29PA6NIE9 313 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 ZNF727A8MUV8 499 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 K7EN84 100 aa13.32□□□□□ -0.28
CLN3-260ENST00000637578 A0A096LPF7 62 aa13.31□□□□□ -0.28
CLN3-260ENST00000637578 RPL19P84098 196 aaKnown RBP13.31□□□□□ -0.28
CLN3-260ENST00000637578 C1orf134Q5TEV5 83 aa13.31□□□□□ -0.28
CLN3-260ENST00000637578 ZNF575Q86XF7 245 aa13.31□□□□□ -0.28
CLN3-260ENST00000637578 UPK3BQ9BT76 320 aa13.31□□□□□ -0.28
CLN3-260ENST00000637578 GRIFINA4D1Z8 144 aa13.3□□□□□ -0.28
CLN3-260ENST00000637578 FHL2Q14192 279 aa13.3□□□□□ -0.28
CLN3-260ENST00000637578 BIN3Q9NQY0 253 aa13.3□□□□□ -0.28
CLN3-260ENST00000637578 C19orf71A6NCJ1 209 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 RNASE3P12724 160 aaKnown RBP13.29□□□□□ -0.28
CLN3-260ENST00000637578 ASIPP42127 132 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 SLAQ13239 276 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 SOHLH1Q5JUK2 328 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 C9orf85Q96MD7 179 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 Q9H8V8 135 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 PRO0255Q9UI72 69 aa13.29□□□□□ -0.28
CLN3-260ENST00000637578 IGHV3-53P01767 116 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 S100A4P26447 101 aaKnown RBP13.28□□□□□ -0.28
CLN3-260ENST00000637578 DAZAP1Q96EP5 407 aaKnown RBP13.28□□□□□ -0.28
CLN3-260ENST00000637578 MRPS16Q9Y3D3 137 aaKnown RBP13.28□□□□□ -0.28
CLN3-260ENST00000637578 LY96Q9Y6Y9 160 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 PAX4O43316 350 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 CRYBA4P53673 196 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 FAM74A3Q4VXF1 159 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 LINC01551Q86U37 167 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 HHLA3Q9XRX5 114 aa13.28□□□□□ -0.28
CLN3-260ENST00000637578 PKHD1P08F94 4074 aa13.27□□□□□ -0.28
CLN3-260ENST00000637578 H3BVH4 76 aa13.27□□□□□ -0.29
CLN3-260ENST00000637578 P01737 135 aa13.27□□□□□ -0.29
CLN3-260ENST00000637578 DNLZQ5SXM8 178 aa13.27□□□□□ -0.29
CLN3-260ENST00000637578 M0R2P5 195 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 SFTA3P0C7M3 94 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 TMEM241Q24JQ0 296 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 NUDT10Q8NFP7 164 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 OR2D3Q8NGH3 330 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 NUDT11Q96G61 164 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 ZNF479Q96JC4 524 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 RNASE7Q9H1E1 156 aaKnown RBP13.26□□□□□ -0.29
CLN3-260ENST00000637578 PKD1P98161 4303 aa13.26□□□□□ -0.29
CLN3-260ENST00000637578 ARMS2P0C7Q2 107 aa13.25□□□□□ -0.29
CLN3-260ENST00000637578 IL36BQ9NZH7 164 aa13.25□□□□□ -0.29
CLN3-260ENST00000637578 ICOSQ9Y6W8 199 aa13.25□□□□□ -0.29
CLN3-260ENST00000637578 CXCL1P09341 107 aa13.24□□□□□ -0.29
CLN3-260ENST00000637578 COMMD7Q86VX2 200 aa13.24□□□□□ -0.29
CLN3-260ENST00000637578 C6orf223Q8N319 242 aa13.24□□□□□ -0.29
CLN3-260ENST00000637578 NAT8Q9UHE5 227 aa13.24□□□□□ -0.29
CLN3-260ENST00000637578 LINC00862A6NCI5 91 aa13.24□□□□□ -0.29
CLN3-260ENST00000637578 KRTAP1-5Q9BYS1 174 aa13.24□□□□□ -0.29
CLN3-260ENST00000637578 TRAV4A0A0B4J268 109 aa13.23□□□□□ -0.29
CLN3-260ENST00000637578 GZMBP10144 247 aa13.23□□□□□ -0.29
CLN3-260ENST00000637578 RPL23P62829 140 aaKnown RBP13.23□□□□□ -0.29
CLN3-260ENST00000637578 ZNF876PQ49A33 203 aa13.23□□□□□ -0.29
CLN3-260ENST00000637578 UQCC3Q6UW78 93 aa13.23□□□□□ -0.29
CLN3-260ENST00000637578 SCRT2Q9NQ03 307 aa13.23□□□□□ -0.29
CLN3-260ENST00000637578 TRGV4A0A0C4DH28 118 aa13.22□□□□□ -0.29
CLN3-260ENST00000637578 A0A1W2PPQ1 181 aa13.22□□□□□ -0.29
CLN3-260ENST00000637578 ERVFC1-1P60608 527 aa13.22□□□□□ -0.29
CLN3-260ENST00000637578 RPS20P60866 119 aaKnown RBP13.22□□□□□ -0.29
CLN3-260ENST00000637578 MRPL23Q16540 153 aaKnown RBP13.22□□□□□ -0.29
CLN3-260ENST00000637578 TTC32Q5I0X7 151 aa13.22□□□□□ -0.29
CLN3-260ENST00000637578 FAM231DQ6ZW35 169 aa13.22□□□□□ -0.29
CLN3-260ENST00000637578 RPP21Q9H633 154 aaKnown RBP13.22□□□□□ -0.29
CLN3-260ENST00000637578 MED14OSP0DP75 135 aa13.21□□□□□ -0.29
CLN3-260ENST00000637578 ADIRFQ15847 76 aa13.21□□□□□ -0.29
CLN3-260ENST00000637578 ISOC2Q96AB3 205 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms