RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 DKK2Q9UBU2 259 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV7-81A0A0B4J1V7 117 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 BUB3O43684 328 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 MGPP08493 103 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 TCTAP57738 103 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 RPL11P62913 178 aaKnown RBP3.07□□□□□ -1.92
SCN1A-214ENST00000637038 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 C9orf47Q6ZRZ4 202 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 IL17RELQ6ZVW7 336 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 GTSCR1Q86UQ5 136 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 Q8N6K4 173 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 MRAPQ8TCY5 172 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 SMIM2Q9BVW6 85 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 HECTD1Q9ULT8 2610 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 F8VRH5 84 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 M0R381 172 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 EFNA4P52798 201 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 DLX1P56177 255 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 CKS1BP61024 79 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 ERCC8Q13216 396 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 SRSF9Q13242 221 aaKnown RBP eCLIP3.07□□□□□ -1.92
SCN1A-214ENST00000637038 ADAMTSL5Q6ZMM2 481 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 C8orf86Q6ZUL3 223 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 Q71RC1 249 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-214ENST00000637038 SYT8Q8NBV8 401 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 VPREB3Q9UKI3 123 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 SPG11Q96JI7 2443 aa3.07□□□□□ -1.92
SCN1A-214ENST00000637038 TRAV41A0A0B4J266 112 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 LINC01619G3V211 115 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 H3BUA1 57 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 TRGV3P03979 118 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 TCTEX1D4Q5JR98 221 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 UFSP1Q6NVU6 142 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 PCP2Q8IVA1 136 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 USMG5Q96IX5 58 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 KIR2DL4Q99706 377 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 AGPAT4-IT1Q9H0P7 198 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 CYSLTR1Q9Y271 337 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 TRBV25-1A0A075B6N4 114 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 A0A096LNJ9 63 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3-35A0A0C4DH35 117 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 G3V4G9 280 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 H3BVH4 76 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 ATP6V0E1O15342 81 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 FXYD7P58549 80 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 SUMO2P61956 95 aaKnown RBP3.06□□□□□ -1.92
SCN1A-214ENST00000637038 MTURNQ8N3F0 131 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 Q8N9W7 124 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 RNF185Q96GF1 192 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 SIGMAR1Q99720 223 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 TM2D2Q9BX73 214 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 ZMAT4Q9H898 229 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV4-4A0A075B6R2 117 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 TRAV40A0A0B4J280 105 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 NPFFO15130 113 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 PPIFP30405 207 aaKnown RBP3.06□□□□□ -1.92
SCN1A-214ENST00000637038 HILS1P60008 231 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 NDPQ00604 133 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 FAM106AQ4KMX7 169 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 GAGE13Q4V321 117 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 MRPL35Q9NZE8 188 aaKnown RBP3.06□□□□□ -1.92
SCN1A-214ENST00000637038 ZGRF1Q86YA3 2104 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 CSPG4Q6UVK1 2322 aa3.06□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV1-69DA0A0B4J2H0 117 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 MYMXA0A1B0GTQ4 84 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 NDUFA4O00483 81 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 HOXA3O43365 443 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 ZNF80P51504 273 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 IGFL4Q6B9Z1 124 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 SMIM20Q8N5G0 67 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 RAX2Q96IS3 184 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 DUX5Q96PT3 197 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 PLCE1Q9P212 2302 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 ITPR1Q14643 2758 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3OR16-8A0A075B7F1 116 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 IGHV3-66A0A0C4DH42 116 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 SAA4P35542 130 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 RNF182Q8N6D2 247 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 TMEM141Q96I45 108 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 SIRPDQ9H106 197 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 MRPL16Q9NX20 251 aaKnown RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 TP73-AS1Q9UF72 201 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 CSDC2Q9Y534 153 aaKnown RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 SMAD5-AS1Q9Y6J3 95 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 CEP295Q9C0D2 2601 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 AZU1P20160 251 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 EDN2P20800 178 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 HLA-DMBP28068 263 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 KLK9Q2XQG4 91 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 FAM159AQ6UWV7 190 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 PTH2Q96A98 100 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 KLK9Q9UKQ9 250 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 ZNF815PA8K554 130 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 IGLL5B9A064 214 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 F5H697 171 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 F8W735 103 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-214ENST00000637038 NDUFA7O95182 113 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 FXYD2P54710 66 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 RRN3P1Q2M238 152 aa3.05□□□□□ -1.92
SCN1A-214ENST00000637038 C12orf74Q32Q52 190 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 161 ms