RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 OCIAD2Q56VL3 154 aa11.73□□□□□ -0.53
CLN3-251ENST00000636853 AKAP9Q99996 3911 aa11.73□□□□□ -0.53
CLN3-251ENST00000636853 SNAI2O43623 268 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 SPANXN1Q5VSR9 72 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 SAMD13Q5VXD3 122 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 Q6ZSV7 163 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 TMEM86BQ8N661 226 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 ITPR2Q14571 2701 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 K7EQG2 157 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 NUDT3O95989 172 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 ADAMTSL5Q6ZMM2 481 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 APRG1Q8IVJ8 170 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 TEX29Q8N6K0 151 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 ESM1Q9NQ30 184 aa11.72□□□□□ -0.53
CLN3-251ENST00000636853 GATA1P15976 413 aaPredicted RBP11.71□□□□□ -0.53
CLN3-251ENST00000636853 DPF1Q92782 380 aa11.71□□□□□ -0.53
CLN3-251ENST00000636853 MAP1LC3CQ9BXW4 147 aa11.71□□□□□ -0.53
CLN3-251ENST00000636853 YAE1D1Q9NRH1 226 aa11.71□□□□□ -0.53
CLN3-251ENST00000636853 HSPB8Q9UJY1 196 aa11.71□□□□□ -0.53
CLN3-251ENST00000636853 ACANP16112 2415 aa11.71□□□□□ -0.53
CLN3-251ENST00000636853 GNRH2O43555 120 aa11.71□□□□□ -0.54
CLN3-251ENST00000636853 IGKV3-20P01619 116 aa11.71□□□□□ -0.54
CLN3-251ENST00000636853 FXYD7P58549 80 aa11.71□□□□□ -0.54
CLN3-251ENST00000636853 OR11H1Q8NG94 326 aa11.71□□□□□ -0.54
CLN3-251ENST00000636853 SORL1Q92673 2214 aa11.71□□□□□ -0.54
CLN3-251ENST00000636853 TRBV7-9A0A0J9YWB2 115 aa11.7□□□□□ -0.54
CLN3-251ENST00000636853 S100A4P26447 101 aaKnown RBP11.7□□□□□ -0.54
CLN3-251ENST00000636853 SNRPD3P62318 126 aaKnown RBP11.7□□□□□ -0.54
CLN3-251ENST00000636853 AGRNO00468 2067 aa11.7□□□□□ -0.54
CLN3-251ENST00000636853 H0Y8G0 127 aa11.7□□□□□ -0.54
CLN3-251ENST00000636853 FOXC2Q99958 501 aa11.7□□□□□ -0.54
CLN3-251ENST00000636853 MCRIP2Q9BUT9 160 aaKnown RBP11.7□□□□□ -0.54
CLN3-251ENST00000636853 IGHV4-4A0A075B6R2 117 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 A0A096LNJ9 63 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 KLLNB2CW77 178 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 LINC01619G3V211 115 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 K7ERU9 68 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 M0R381 172 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 ASIPP42127 132 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 CACNG7P62955 275 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 LINC01545Q5VT33 79 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 TNFRSF6BO95407 300 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 SEC11AP67812 179 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 RNF151Q2KHN1 245 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 KLHL30-AS1Q8NEE0 82 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 C4orf3Q8WVX3 66 aa11.69□□□□□ -0.54
CLN3-251ENST00000636853 ANK3Q12955 4377 aaKnown RBP11.68□□□□□ -0.54
CLN3-251ENST00000636853 TRAV26-2A0A0B4J265 109 aa11.68□□□□□ -0.54
CLN3-251ENST00000636853 A0A0J9YX75 114 aa11.68□□□□□ -0.54
CLN3-251ENST00000636853 hDV102S1A0JD36 115 aa11.68□□□□□ -0.54
CLN3-251ENST00000636853 OR1N2Q8NGR9 330 aa11.68□□□□□ -0.54
CLN3-251ENST00000636853 MAP1LC3AQ9H492 121 aa11.68□□□□□ -0.54
CLN3-251ENST00000636853 TRAV12-3A0A0B4J271 114 aa11.67□□□□□ -0.54
CLN3-251ENST00000636853 COX8AP10176 69 aa11.67□□□□□ -0.54
CLN3-251ENST00000636853 C11orf44Q8N8P7 122 aa11.67□□□□□ -0.54
CLN3-251ENST00000636853 VPS25Q9BRG1 176 aa11.67□□□□□ -0.54
CLN3-251ENST00000636853 ZNF747Q9BV97 191 aa11.67□□□□□ -0.54
CLN3-251ENST00000636853 PHLDA3Q9Y5J5 127 aa11.67□□□□□ -0.54
CLN3-251ENST00000636853 TRAV12-2A0A075B6T6 113 aa11.66□□□□□ -0.54
CLN3-251ENST00000636853 RNASE3P12724 160 aaKnown RBP11.66□□□□□ -0.54
CLN3-251ENST00000636853 AMMECR1LQ6DCA0 310 aa11.66□□□□□ -0.54
CLN3-251ENST00000636853 OR9G4Q8NGQ1 327 aa11.66□□□□□ -0.54
CLN3-251ENST00000636853 DLX4Q92988 240 aaPredicted RBP11.66□□□□□ -0.54
CLN3-251ENST00000636853 CSTL1Q9H114 145 aa11.66□□□□□ -0.54
CLN3-251ENST00000636853 UNC79Q9P2D8 2635 aa11.66□□□□□ -0.54
CLN3-251ENST00000636853 NF1P21359 2839 aa11.65□□□□□ -0.54
CLN3-251ENST00000636853 FAM159AQ6UWV7 190 aa11.65□□□□□ -0.54
CLN3-251ENST00000636853 C7orf71A4D174 169 aa11.65□□□□□ -0.55
CLN3-251ENST00000636853 OR2K2Q8NGT1 345 aa11.65□□□□□ -0.55
CLN3-251ENST00000636853 GAGE12BA1L429 117 aa11.64□□□□□ -0.55
CLN3-251ENST00000636853 LEPP41159 167 aa11.64□□□□□ -0.55
CLN3-251ENST00000636853 SPINK13Q1W4C9 94 aa11.64□□□□□ -0.55
CLN3-251ENST00000636853 PEMTQ9UBM1 199 aa11.64□□□□□ -0.55
CLN3-251ENST00000636853 MUC4Q99102 2169 aa11.64□□□□□ -0.55
CLN3-251ENST00000636853 A0A1W2PRX2 142 aa11.63□□□□□ -0.55
CLN3-251ENST00000636853 HBDP02042 147 aa11.63□□□□□ -0.55
CLN3-251ENST00000636853 MED14OSP0DP75 135 aa11.63□□□□□ -0.55
CLN3-251ENST00000636853 C14orf178Q8N769 122 aaPredicted RBP11.63□□□□□ -0.55
CLN3-251ENST00000636853 NRACQ8N912 160 aa11.63□□□□□ -0.55
CLN3-251ENST00000636853 C2orf91Q6ZV80 131 aa11.63□□□□□ -0.55
CLN3-251ENST00000636853 ODF3Q96PU9 254 aa11.63□□□□□ -0.55
CLN3-251ENST00000636853 CBY3A6NI87 242 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 CD7P09564 240 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 UFSP1Q6NVU6 142 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 TMEM61Q8N0U2 210 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 KNCNA6PVL3 124 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 CD28P10747 220 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 FOXI2Q6ZQN5 318 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 GTF2H5Q6ZYL4 71 aa11.62□□□□□ -0.55
CLN3-251ENST00000636853 NXT2Q9NPJ8 142 aaKnown RBP11.62□□□□□ -0.55
CLN3-251ENST00000636853 FASNP49327 2511 aaKnown RBP11.62□□□□□ -0.55
CLN3-251ENST00000636853 TRAV8-6A0A0B4J262 113 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 H3BRM9 83 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 DEFB131AP59861 70 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 TMEM97Q5BJF2 176 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 SMR3AQ99954 134 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 GCN1Q92616 2671 aaKnown RBP11.61□□□□□ -0.55
CLN3-251ENST00000636853 IGLV2-18A0A075B6J9 118 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 SIVA1O15304 175 aa11.61□□□□□ -0.55
CLN3-251ENST00000636853 DUSP14O95147 198 aaKnown RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms