RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 RPP25LQ8N5L8 163 aaKnown RBP4.84□□□□□ -1.64
SCN1A-212ENST00000636194 LINC01465Q8N7H1 131 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 C20orf173Q96LM9 149 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 LINC00527Q9UJ94 153 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 ADAMTS20P59510 1910 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 TRAV4A0A0B4J268 109 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 A4D1N5 150 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 RNF223E7ERA6 249 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 Q6ZQT7 251 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 MSRB3Q8IXL7 192 aa4.84□□□□□ -1.64
SCN1A-212ENST00000636194 Q8N9L7 120 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 RNF126Q9BV68 326 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 H0YJW9 148 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 J3QKU1 62 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 ERVH48-1M5A8F1 160 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 CCL24O00175 119 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 FAM222AQ5U5X8 452 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 GYPEP15421 78 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 FOXI1Q12951 378 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 SRRM5B3KS81 715 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 NPSP0C0P6 89 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 LYL1P12980 280 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 BPY2O14599 106 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 TREML4Q6UXN2 200 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 C9orf106Q8NAJ2 232 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 PPP1R3EQ9H7J1 279 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 A0A0J9YWU9 116 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 H3BUA1 57 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 Q9H8V8 135 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 PRDM6Q9NQX0 595 aa4.83□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV4-38-2P0DP08 117 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 FOXL2P58012 376 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 FAM201AQ5SY85 155 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 ATP1A1-AS1Q5TC04 95 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 SHANK2-AS3Q9BTD1 123 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 NCR3O14931 201 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV1-46P01743 117 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 ATP6V0E2Q8NHE4 81 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 C10orf105Q8TEF2 133 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 SND1-IT1Q9HBX3 110 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV3-38A0A0C4DH36 116 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 A0A1B0GTL3 188 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 LY6G6FQ5SQ64 297 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 C8orf86Q6ZUL3 223 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 A0A0J9YY99 117 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 A0A1W2PPM0 123 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 SIVA1O15304 175 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 TMEM61Q8N0U2 210 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 TRBV19A0A075B6N1 114 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 IGF1P05019 195 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 ELANEP08246 267 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 Q86TA4 180 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 NRTNQ99748 197 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 A0A1B0GW64 132 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 CD55P08174 381 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 MPZP25189 248 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 FHL1Q13642 323 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 BPESC1Q9GZL8 116 aa4.82□□□□□ -1.64
SCN1A-212ENST00000636194 K7EQD1 137 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV4-30-4P0DP06 118 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV4-31P0DP07 118 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 ABCA12Q86UK0 2595 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV1-69DA0A0B4J2H0 117 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 SMKR1H3BMG3 65 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV1-69P01742 117 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 YPEL3P61236 119 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-212ENST00000636194 ANKRD17O75179 2603 aaKnown RBP4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV4-30-2A0A087WSY4 118 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV1-18A0A0C4DH31 117 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 ITGBL1O95965 494 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-212ENST00000636194 TCL1BO95988 128 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 UBE2D2P62837 147 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 IGKV1-9A0A0C4DH69 117 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 H3BT86 120 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 NMSQ5H8A3 153 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 NFE4Q86UQ8 179 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 NPYP01303 97 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 Q8N9W7 124 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 SHISA3A0PJX4 238 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 C8orf49Q96NF6 230 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 RTBDNQ9BSG5 229 aaPredicted RBP4.81□□□□□ -1.64
SCN1A-212ENST00000636194 VPREB3Q9UKI3 123 aa4.81□□□□□ -1.64
SCN1A-212ENST00000636194 K7EP34 96 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 IGLV2-23P01705 113 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 CRYGBP07316 175 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 FGF23Q9GZV9 251 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-212ENST00000636194 TRAV26-2A0A0B4J265 109 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 K7EP13 123 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 GATA1P15976 413 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-212ENST00000636194 HIST2H2BDQ6DRA6 164 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 RFPL3SP0C7P2 107 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 PIFOQ8TCI5 191 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 TRBV7-3A0A075B6L6 115 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 GP9P14770 177 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 ATP5EP2Q5VTU8 51 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 DIAPH2-AS1Q14236 149 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 WIPF2Q8TF74 440 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-212ENST00000636194 AJUBAQ96IF1 538 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 IGLV10-54A0A075B6I4 117 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 IGLC2P0DOY2 106 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms