RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 FAM213BQ8TBF2 198 aa10.13□□□□□ -0.79
LINC00643-205ENST00000623219 ZFP30Q9Y2G7 519 aa10.13□□□□□ -0.79
LINC00643-205ENST00000623219 IGKV3D-20A0A0C4DH25 116 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 TRBV6-1A0A0K0K1D8 114 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 S100A4P26447 101 aaKnown RBP10.12□□□□□ -0.79
LINC00643-205ENST00000623219 ASIPP42127 132 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 AKR1C3P42330 323 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 RHOHQ15669 191 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 PIK3CD-AS1Q5SR53 167 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 MBD3L1Q8WWY6 194 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 ZC2HC1AQ96GY0 325 aa10.12□□□□□ -0.79
LINC00643-205ENST00000623219 LOC100131303A0A0U1RQF7 123 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 TRBV6-4A0A1B0GX49 114 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 PGPEP1LA6NFU8 196 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 PFDN1O60925 122 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 TPT1P13693 172 aaKnown RBP10.11□□□□□ -0.79
LINC00643-205ENST00000623219 NHLRC2Q8NBF2 726 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 SFT2D1Q8WV19 159 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 PRADC1Q9BSG0 188 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 IL36BQ9NZH7 164 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 LY96Q9Y6Y9 160 aa10.11□□□□□ -0.79
LINC00643-205ENST00000623219 B4DEV8 164 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 K7EP13 123 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 PAGE4O60829 102 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 LTAP01374 205 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 MGST1P10620 155 aaKnown RBP10.1□□□□□ -0.79
LINC00643-205ENST00000623219 DNLZQ5SXM8 178 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 FAM162BQ5T6X4 162 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 WFDC10BQ8IUB3 73 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 SLC25A29Q8N8R3 303 aa10.1□□□□□ -0.79
LINC00643-205ENST00000623219 TRAV9-2A0A087WT02 112 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 A8MWV9 139 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 C16orf90A8MZG2 172 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 SH2D1AO60880 128 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 DNAH10OSP0CZ25 163 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 CRIP1P50238 77 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 TIRAPP58753 221 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 ZNF674Q2M3X9 581 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 LGALSLQ3ZCW2 172 aaPredicted RBP10.09□□□□□ -0.79
LINC00643-205ENST00000623219 Q6ZRN7 208 aaPredicted RBP10.09□□□□□ -0.79
LINC00643-205ENST00000623219 TMUB2Q71RG4 321 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 PARLQ9H300 379 aa10.09□□□□□ -0.79
LINC00643-205ENST00000623219 IGHV3-73A0A0B4J1V6 119 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 A0A1B0GV50 99 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 KRBOX1C9JBD0 128 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 H3BVH4 76 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 M0R036 132 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 H2AFB1P0C5Y9 115 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 ZFP2Q6ZN57 461 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 DNAH5Q8TE73 4624 aa10.08□□□□□ -0.8
LINC00643-205ENST00000623219 LRP1BQ9NZR2 4599 aa10.07□□□□□ -0.8
LINC00643-205ENST00000623219 S100A9P06702 114 aaKnown RBP10.07□□□□□ -0.8
LINC00643-205ENST00000623219 EVI2AP22794 236 aa10.07□□□□□ -0.8
LINC00643-205ENST00000623219 LINC01559Q495D7 138 aa10.07□□□□□ -0.8
LINC00643-205ENST00000623219 NFE4Q86UQ8 179 aa10.07□□□□□ -0.8
LINC00643-205ENST00000623219 SYT8Q8NBV8 401 aa10.07□□□□□ -0.8
LINC00643-205ENST00000623219 SCO2A0A1W2PP80 73 aa10.06□□□□□ -0.8
LINC00643-205ENST00000623219 SPATA12Q7Z6I5 190 aa10.06□□□□□ -0.8
LINC00643-205ENST00000623219 TCTE3Q8IZS6 198 aa10.06□□□□□ -0.8
LINC00643-205ENST00000623219 C10orf126Q8N4M7 172 aa10.06□□□□□ -0.8
LINC00643-205ENST00000623219 MANBALQ9NQG1 85 aa10.06□□□□□ -0.8
LINC00643-205ENST00000623219 BOLA1Q9Y3E2 137 aa10.06□□□□□ -0.8
LINC00643-205ENST00000623219 RHODO00212 210 aa10.05□□□□□ -0.8
LINC00643-205ENST00000623219 ARMS2P0C7Q2 107 aa10.05□□□□□ -0.8
LINC00643-205ENST00000623219 RAB5CP51148 216 aa10.05□□□□□ -0.8
LINC00643-205ENST00000623219 EIF5AL1Q6IS14 154 aaKnown RBP10.05□□□□□ -0.8
LINC00643-205ENST00000623219 MSRB1Q9NZV6 116 aa10.05□□□□□ -0.8
LINC00643-205ENST00000623219 IGHV3-38A0A0C4DH36 116 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 GRIFINA4D1Z8 144 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 ERVFC1-1P60608 527 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 DMRTA1Q5VZB9 504 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 UFSP1Q6NVU6 142 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 SCRT2Q9NQ03 307 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 PHLDA3Q9Y5J5 127 aa10.04□□□□□ -0.8
LINC00643-205ENST00000623219 HSPG2P98160 4391 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 TMSB15BA0A087X1C1 80 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 TRAV8-6A0A0B4J262 113 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 CDK2AP2O75956 126 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 CRYGDP07320 174 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 LINC00694P0DN24 101 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 LINC01556Q5JQF7 62 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 LELP1Q5T871 98 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 ZFP82Q8N141 532 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 ATP6V0E2Q8NHE4 81 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 MLST8Q9BVC4 326 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 GTSF1LQ9H1H1 148 aa10.03□□□□□ -0.8
LINC00643-205ENST00000623219 TRAV1-1A0A0B4J248 108 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 TEX46H3BTG2 121 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 EREGO14944 169 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 C1QBP02746 253 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 CXCL1P09341 107 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 SULT1A2P50226 295 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 KRTAP10-2P60368 255 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 OR10J3Q5JRS4 329 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 Q6ZSN1 163 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 C11orf52Q96A22 123 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 JPT2Q9H910 190 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 GNG13Q9P2W3 67 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 TNFRSF18Q9Y5U5 241 aa10.02□□□□□ -0.81
LINC00643-205ENST00000623219 APOBP04114 4563 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms