RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FHL2Q14192 279 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 ZNF876PQ49A33 203 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 DMRTA1Q5VZB9 504 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 KCNS1Q96KK3 526 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 PARLQ9H300 379 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 HECTD4Q9Y4D8 3996 aa9.39□□□□□ -0.91
LINC00540-202ENST00000616974 A0A096LPF7 62 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 LOC100131303A0A0U1RQF7 123 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 M0R2P5 195 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 IFNA1P01562 189 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 SSTP61278 116 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 LGALS9BQ3B8N2 356 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 LINC01559Q495D7 138 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 SAMD10Q9BYL1 202 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 PDE6DO43924 150 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 ARMS2P0C7Q2 107 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 IFITM2Q01629 132 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 Q6ZSN1 163 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 FAM210AQ96ND0 272 aa9.38□□□□□ -0.91
LINC00540-202ENST00000616974 PKD1P98161 4303 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 GNG4P50150 75 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 LGALS9CQ6DKI2 356 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 OCC1Q8TAD7 63 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 C18orf15Q96N68 181 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 EIF5A2Q9GZV4 153 aaKnown RBP9.37□□□□□ -0.91
LINC00540-202ENST00000616974 CFAP126Q5VTH2 177 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 SPXQ9BT56 116 aa9.37□□□□□ -0.91
LINC00540-202ENST00000616974 S100A4P26447 101 aaKnown RBP9.36□□□□□ -0.91
LINC00540-202ENST00000616974 OR10AG1Q8NH19 301 aa9.36□□□□□ -0.91
LINC00540-202ENST00000616974 TXNDC17Q9BRA2 123 aa9.36□□□□□ -0.91
LINC00540-202ENST00000616974 RNASE7Q9H1E1 156 aaKnown RBP9.36□□□□□ -0.91
LINC00540-202ENST00000616974 C19orf71A6NCJ1 209 aa9.35□□□□□ -0.91
LINC00540-202ENST00000616974 SRP19P09132 144 aaKnown RBP9.35□□□□□ -0.91
LINC00540-202ENST00000616974 ASIPP42127 132 aa9.35□□□□□ -0.91
LINC00540-202ENST00000616974 IGLV2-18A0A075B6J9 118 aa9.35□□□□□ -0.91
LINC00540-202ENST00000616974 IL36BQ9NZH7 164 aa9.35□□□□□ -0.91
LINC00540-202ENST00000616974 DNAH11Q96DT5 4516 aa9.35□□□□□ -0.91
LINC00540-202ENST00000616974 M0R381 172 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 S100A9P06702 114 aaKnown RBP9.34□□□□□ -0.91
LINC00540-202ENST00000616974 CRYBA4P53673 196 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 OR4C5Q8NGB2 326 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 SCRT2Q9NQ03 307 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 LINC00588Q9Y4M8 146 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 M0R2N4 97 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 HHLA3Q9XRX5 114 aa9.34□□□□□ -0.91
LINC00540-202ENST00000616974 A0A087WWL8 130 aa9.33□□□□□ -0.92
LINC00540-202ENST00000616974 TRAV4A0A0B4J268 109 aa9.33□□□□□ -0.92
LINC00540-202ENST00000616974 TRGV4A0A0C4DH28 118 aa9.33□□□□□ -0.92
LINC00540-202ENST00000616974 ESRGQ1W209 222 aa9.33□□□□□ -0.92
LINC00540-202ENST00000616974 NUDT10Q8NFP7 164 aa9.33□□□□□ -0.92
LINC00540-202ENST00000616974 NUDT11Q96G61 164 aa9.33□□□□□ -0.92
LINC00540-202ENST00000616974 TMEM250H0YL14 139 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 RS1O15537 224 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 PAX4O43316 350 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 MSRB1Q9NZV6 116 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 TCTAP57738 103 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 DNLZQ5SXM8 178 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 UFSP1Q6NVU6 142 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 SLC25A29Q8N8R3 303 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 OR2D3Q8NGH3 330 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 FAM210BQ96KR6 192 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 TPPP3Q9BW30 176 aa9.32□□□□□ -0.92
LINC00540-202ENST00000616974 K7EQD1 137 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 P0DMU3 169 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 FAM231AP0DMU4 169 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 FAM231CP0DMU5 169 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 FAM74A4Q5TZK3 123 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 PRO0255Q9UI72 69 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 GYPEP15421 78 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 GATA1P15976 413 aaPredicted RBP9.31□□□□□ -0.92
LINC00540-202ENST00000616974 C14orf178Q8N769 122 aaPredicted RBP9.31□□□□□ -0.92
LINC00540-202ENST00000616974 C15orf53Q8NAA6 179 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 SMIM7Q9BQ49 75 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 PHLDA3Q9Y5J5 127 aa9.31□□□□□ -0.92
LINC00540-202ENST00000616974 UBE2DNLQ8IWF7 75 aa9.3□□□□□ -0.92
LINC00540-202ENST00000616974 CRYGDP07320 174 aa9.29□□□□□ -0.92
LINC00540-202ENST00000616974 TAGLN2P37802 199 aaKnown RBP9.29□□□□□ -0.92
LINC00540-202ENST00000616974 LINC01551Q86U37 167 aa9.29□□□□□ -0.92
LINC00540-202ENST00000616974 SSBP4Q9BWG4 385 aaPredicted RBP9.29□□□□□ -0.92
LINC00540-202ENST00000616974 KRTAP1-5Q9BYS1 174 aa9.29□□□□□ -0.92
LINC00540-202ENST00000616974 SNAI2O43623 268 aa9.29□□□□□ -0.92
LINC00540-202ENST00000616974 IGLC6P0CF74 106 aa9.29□□□□□ -0.92
LINC00540-202ENST00000616974 ZNF727A8MUV8 499 aa9.28□□□□□ -0.92
LINC00540-202ENST00000616974 P01737 135 aa9.28□□□□□ -0.92
LINC00540-202ENST00000616974 ZNRF2Q8NHG8 242 aa9.28□□□□□ -0.92
LINC00540-202ENST00000616974 GTSF1Q8WW33 167 aa9.28□□□□□ -0.92
LINC00540-202ENST00000616974 DAZAP1Q96EP5 407 aaKnown RBP9.28□□□□□ -0.92
LINC00540-202ENST00000616974 PTH2Q96A98 100 aa9.27□□□□□ -0.93
LINC00540-202ENST00000616974 SFRP2Q96HF1 295 aa9.27□□□□□ -0.93
LINC00540-202ENST00000616974 NXPH4O95158 308 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 OR5AL1P0C617 328 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 LYZL1Q6UWQ5 148 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 SMIM12Q96EX1 92 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 H3BNG1 76 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 FOXA3P55318 350 aaPredicted RBP9.26□□□□□ -0.93
LINC00540-202ENST00000616974 FER1L6-AS1Q8NA97 138 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 RPP21Q9H633 154 aaKnown RBP9.26□□□□□ -0.93
LINC00540-202ENST00000616974 ICOSQ9Y6W8 199 aa9.26□□□□□ -0.93
LINC00540-202ENST00000616974 RPL23P62829 140 aaKnown RBP9.25□□□□□ -0.93
LINC00540-202ENST00000616974 LYPD5Q6UWN5 251 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms