RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TMEM190Q8WZ59 177 aa7.9□□□□□ -1.14
VPS39-214ENST00000614932 C2orf48Q96LS8 159 aa7.9□□□□□ -1.14
VPS39-214ENST00000614932 RPL35AP18077 110 aaKnown RBP7.9□□□□□ -1.15
VPS39-214ENST00000614932 LOXL3P58215 753 aa7.9□□□□□ -1.15
VPS39-214ENST00000614932 PRCDQ00LT1 54 aa7.9□□□□□ -1.15
VPS39-214ENST00000614932 C17orf58Q2M2W7 97 aa7.9□□□□□ -1.15
VPS39-214ENST00000614932 GOLT1AQ6ZVE7 132 aa7.9□□□□□ -1.15
VPS39-214ENST00000614932 PYGO1Q9Y3Y4 419 aa7.9□□□□□ -1.15
VPS39-214ENST00000614932 IGLV3-9A0A075B6K5 115 aa7.89□□□□□ -1.15
VPS39-214ENST00000614932 LHBP01229 141 aa7.89□□□□□ -1.15
VPS39-214ENST00000614932 OTORQ9NRC9 128 aa7.89□□□□□ -1.15
VPS39-214ENST00000614932 RAI1Q7Z5J4 1906 aaPredicted RBP7.89□□□□□ -1.15
VPS39-214ENST00000614932 RNASE2P10153 161 aaKnown RBP7.89□□□□□ -1.15
VPS39-214ENST00000614932 CCL3L1P16619 93 aa7.89□□□□□ -1.15
VPS39-214ENST00000614932 HOXB4P17483 251 aaPredicted RBP7.89□□□□□ -1.15
VPS39-214ENST00000614932 V9GYY9 64 aa7.89□□□□□ -1.15
VPS39-214ENST00000614932 TRAV12-1A0A0B4J245 112 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 H3BTX0 84 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 K7ENP7 123 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 SAA2P0DJI9 122 aaPredicted RBP7.88□□□□□ -1.15
VPS39-214ENST00000614932 DEFB121Q5J5C9 76 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 C2orf82Q6UX34 121 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 GAFA1Q96PS6 74 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 LYNX1G3V0Z9 82 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 ENSAO43768 121 aaKnown RBP7.88□□□□□ -1.15
VPS39-214ENST00000614932 LYNX1P0DP58 116 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 GRNP28799 593 aaKnown RBP7.88□□□□□ -1.15
VPS39-214ENST00000614932 CRIP1P50238 77 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 ZNF415Q09FC8 603 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 FAM19A4Q96LR4 140 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 DSCR8Q96T75 97 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 VKORC1Q9BQB6 163 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 PKIGQ9Y2B9 76 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 HERVK_113P61574 105 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 C3orf36Q3SXR2 165 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 LYPD2Q6UXB3 125 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 LINC01560Q8TB33 94 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 TNCP24821 2201 aa7.88□□□□□ -1.15
VPS39-214ENST00000614932 IGHV3-30P01768 117 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 IGHV4-39P01824 125 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 IGHV3-30-5P0DP03 117 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 GP9P14770 177 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 SLC25A16P16260 332 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 ZNF22P17026 224 aaPredicted RBP7.87□□□□□ -1.15
VPS39-214ENST00000614932 IGHV3-33P01772 117 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 IGKV1-16P04430 117 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 ACYP1P07311 99 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 COX6B1P14854 86 aa7.87□□□□□ -1.15
VPS39-214ENST00000614932 TRAV13-1A0A0B4J241 112 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 A0A0J9YY99 117 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 RNF185Q96GF1 192 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 C17orf100A8MU93 164 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 H3BT86 120 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 LINC00336Q6ZUF6 198 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 TMEM86BQ8N661 226 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 TMEM75Q8N9X5 138 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 METTL26Q96S19 204 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 CYSTM1Q9H1C7 97 aa7.86□□□□□ -1.15
VPS39-214ENST00000614932 RPUSD1Q9UJJ7 312 aaKnown RBP7.86□□□□□ -1.15
VPS39-214ENST00000614932 IGKV1D-37A0A075B6S9 117 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 ATOX1O00244 68 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 LAGE3Q14657 143 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 LINC00643Q86TS7 51 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 DYNLRB1Q9NP97 96 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 IGLV2-18A0A075B6J9 118 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 TRAV41A0A0B4J266 112 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 LY6HO94772 140 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 GAS8-AS1O95177 125 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 CXCL5P42830 114 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 C8orf31Q8N9H6 132 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 AKAP6Q13023 2319 aa7.85□□□□□ -1.15
VPS39-214ENST00000614932 SPTBN1Q01082 2364 aaKnown RBP7.85□□□□□ -1.15
VPS39-214ENST00000614932 ELANEP08246 267 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 CGB3P0DN86 165 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 CGB7P0DN87 165 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 CDSNQ15517 529 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 THAP8Q8NA92 274 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 PRR25Q96S07 402 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 E7EQL1 145 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 H7C2G1 150 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 UPK2O00526 184 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 PLXNB1O43157 2135 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 PFN2P35080 140 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 EXOC3-AS1Q8N2X6 119 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 RNF152Q8N8N0 203 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 MED13LQ71F56 2210 aa7.84□□□□□ -1.15
VPS39-214ENST00000614932 IGHV3-72A0A0B4J1Y9 119 aa7.84□□□□□ -1.16
VPS39-214ENST00000614932 H7C423 109 aa7.84□□□□□ -1.16
VPS39-214ENST00000614932 IGHV3-48P01763 117 aa7.84□□□□□ -1.16
VPS39-214ENST00000614932 KLHL30-AS1Q8NEE0 82 aa7.84□□□□□ -1.16
VPS39-214ENST00000614932 TMEM263Q8WUH6 116 aaKnown RBP7.84□□□□□ -1.16
VPS39-214ENST00000614932 PRORYQ9H606 182 aa7.84□□□□□ -1.16
VPS39-214ENST00000614932 J3QQQ9 107 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 APELAP0DMC3 54 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 C5orf38Q86SI9 138 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 SLC25A29Q8N8R3 303 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 CTSZQ9UBR2 303 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 ERHP84090 104 aaKnown RBP7.83□□□□□ -1.16
VPS39-214ENST00000614932 Q1RN00 199 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 TMEM200BQ69YZ2 307 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms