RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZNF575Q86XF7 245 aa11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 SMIM12Q96EX1 92 aa11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 NDUFAF3Q9BU61 184 aa11.64□□□□□ -0.55
CCDC28A-202ENST00000611852 MUC4Q99102 2169 aa11.63□□□□□ -0.55
CCDC28A-202ENST00000611852 HOXA5P20719 270 aa11.63□□□□□ -0.55
CCDC28A-202ENST00000611852 RHEBQ15382 184 aa11.63□□□□□ -0.55
CCDC28A-202ENST00000611852 PRR27Q6MZM9 219 aa11.63□□□□□ -0.55
CCDC28A-202ENST00000611852 ATRAIDQ6UW56 229 aa11.63□□□□□ -0.55
CCDC28A-202ENST00000611852 NAT8Q9UHE5 227 aa11.63□□□□□ -0.55
CCDC28A-202ENST00000611852 PGPEP1LA6NFU8 196 aa11.62□□□□□ -0.55
CCDC28A-202ENST00000611852 ASIPP42127 132 aa11.62□□□□□ -0.55
CCDC28A-202ENST00000611852 DNLZQ5SXM8 178 aa11.62□□□□□ -0.55
CCDC28A-202ENST00000611852 TMSB15BA0A087X1C1 80 aa11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 MGST1P10620 155 aaKnown RBP11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 S100A4P26447 101 aaKnown RBP11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 OR5I1Q13606 314 aa11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 TMEM241Q24JQ0 296 aa11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 LINC00476Q8WZB0 136 aa11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 IL36BQ9NZH7 164 aa11.61□□□□□ -0.55
CCDC28A-202ENST00000611852 GRIFINA4D1Z8 144 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 C9JCJ5 164 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 ZNF876PQ49A33 203 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 H3BVH4 76 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 IGHV3-53P01767 116 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 RPL19P84098 196 aaKnown RBP11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 POM121L12Q8N7R1 296 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 PTH2Q96A98 100 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 RPS10P5Q9NQ39 176 aa11.6□□□□□ -0.55
CCDC28A-202ENST00000611852 LYSTQ99698 3801 aa11.59□□□□□ -0.55
CCDC28A-202ENST00000611852 TRAV26-1A0A087WT03 109 aa11.59□□□□□ -0.55
CCDC28A-202ENST00000611852 C7orf77A4D0Y5 90 aa11.59□□□□□ -0.55
CCDC28A-202ENST00000611852 C19orf71A6NCJ1 209 aa11.59□□□□□ -0.55
CCDC28A-202ENST00000611852 ARMS2P0C7Q2 107 aa11.59□□□□□ -0.55
CCDC28A-202ENST00000611852 LGALS9CQ6DKI2 356 aa11.59□□□□□ -0.55
CCDC28A-202ENST00000611852 LY6G6CO95867 125 aa11.58□□□□□ -0.56
CCDC28A-202ENST00000611852 ADIRFQ15847 76 aa11.58□□□□□ -0.56
CCDC28A-202ENST00000611852 C15orf53Q8NAA6 179 aa11.58□□□□□ -0.56
CCDC28A-202ENST00000611852 OCC1Q8TAD7 63 aa11.58□□□□□ -0.56
CCDC28A-202ENST00000611852 ZNF479Q96JC4 524 aa11.58□□□□□ -0.56
CCDC28A-202ENST00000611852 TRAV4A0A0B4J268 109 aa11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 CXCL1P09341 107 aa11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 FHL2Q14192 279 aa11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 OR4C5Q8NGB2 326 aa11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 DAZAP1Q96EP5 407 aaKnown RBP11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 SCRT2Q9NQ03 307 aa11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 BIN3Q9NQY0 253 aa11.57□□□□□ -0.56
CCDC28A-202ENST00000611852 A0A087WWC5 75 aa11.56□□□□□ -0.56
CCDC28A-202ENST00000611852 A0A0J9YY99 117 aa11.56□□□□□ -0.56
CCDC28A-202ENST00000611852 K7EN84 100 aa11.56□□□□□ -0.56
CCDC28A-202ENST00000611852 PIK3CD-AS1Q5SR53 167 aa11.56□□□□□ -0.56
CCDC28A-202ENST00000611852 VSIG2Q96IQ7 327 aa11.56□□□□□ -0.56
CCDC28A-202ENST00000611852 NACAE9PAV3 2078 aa11.56□□□□□ -0.56
CCDC28A-202ENST00000611852 H3BNG1 76 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 RPL23P62829 140 aaKnown RBP11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 SMCO4Q9NRQ5 59 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 TRGV4A0A0C4DH28 118 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 RS1O15537 224 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 NUDT3O95989 172 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 MED14OSP0DP75 135 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 CFAP126Q5VTH2 177 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 DMRTA1Q5VZB9 504 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 LINC01551Q86U37 167 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 CBLN2Q8IUK8 224 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 PRO0255Q9UI72 69 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 HHLA3Q9XRX5 114 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 PHLDA3Q9Y5J5 127 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 LY96Q9Y6Y9 160 aa11.55□□□□□ -0.56
CCDC28A-202ENST00000611852 P01737 135 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 MT-ND4LP03901 98 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 P0DMU3 169 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 FAM231AP0DMU4 169 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 FAM231CP0DMU5 169 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 CRYBA4P53673 196 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 SLAQ13239 276 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 NUDT10Q8NFP7 164 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 OR2D3Q8NGH3 330 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 NUDT11Q96G61 164 aa11.54□□□□□ -0.56
CCDC28A-202ENST00000611852 PAX4O43316 350 aa11.53□□□□□ -0.56
CCDC28A-202ENST00000611852 SYT8Q8NBV8 401 aa11.53□□□□□ -0.56
CCDC28A-202ENST00000611852 SSBP4Q9BWG4 385 aaPredicted RBP11.53□□□□□ -0.56
CCDC28A-202ENST00000611852 ALMS1Q8TCU4 4167 aa11.52□□□□□ -0.56
CCDC28A-202ENST00000611852 SACSQ9NZJ4 4579 aa11.52□□□□□ -0.56
CCDC28A-202ENST00000611852 M0R381 172 aa11.52□□□□□ -0.57
CCDC28A-202ENST00000611852 SNAI2O43623 268 aa11.52□□□□□ -0.57
CCDC28A-202ENST00000611852 RPS20P60866 119 aaKnown RBP11.52□□□□□ -0.57
CCDC28A-202ENST00000611852 CTDSP1Q9GZU7 261 aa11.52□□□□□ -0.57
CCDC28A-202ENST00000611852 RNASE7Q9H1E1 156 aaKnown RBP11.52□□□□□ -0.57
CCDC28A-202ENST00000611852 JPT2Q9H910 190 aa11.52□□□□□ -0.57
CCDC28A-202ENST00000611852 A8MWV9 139 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 CIDEAO60543 219 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 OR5AL1P0C617 328 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 GZMBP10144 247 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 RNF212Q495C1 297 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 ZFP82Q8N141 532 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 OR10AG1Q8NH19 301 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 ISOC2Q96AB3 205 aa11.51□□□□□ -0.57
CCDC28A-202ENST00000611852 IGHV3-73A0A0B4J1V6 119 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 IGLC6P0CF74 106 aa11.5□□□□□ -0.57
CCDC28A-202ENST00000611852 ANAPC16Q96DE5 110 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms