RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ZNF876PQ49A33 203 aa13.61□□□□□ -0.23
UPF1-209ENST00000600310 OR2D3Q8NGH3 330 aa13.61□□□□□ -0.23
UPF1-209ENST00000600310 NDUFAF3Q9BU61 184 aa13.61□□□□□ -0.23
UPF1-209ENST00000600310 HOXA5P20719 270 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 RPS20P60866 119 aaKnown RBP13.6□□□□□ -0.23
UPF1-209ENST00000600310 PIK3CD-AS1Q5SR53 167 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 LINC01551Q86U37 167 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 POM121L12Q8N7R1 296 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 NUDT10Q8NFP7 164 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 NUDT11Q96G61 164 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 APLNQ9ULZ1 77 aa13.6□□□□□ -0.23
UPF1-209ENST00000600310 TRAV4A0A0B4J268 109 aa13.59□□□□□ -0.23
UPF1-209ENST00000600310 IGHV3-53P01767 116 aa13.59□□□□□ -0.23
UPF1-209ENST00000600310 TMEM88Q6PEY1 159 aa13.59□□□□□ -0.23
UPF1-209ENST00000600310 TMEM241Q24JQ0 296 aa13.58□□□□□ -0.24
UPF1-209ENST00000600310 SOHLH1Q5JUK2 328 aa13.58□□□□□ -0.24
UPF1-209ENST00000600310 FAM231DQ6ZW35 169 aa13.58□□□□□ -0.24
UPF1-209ENST00000600310 SSBP4Q9BWG4 385 aaPredicted RBP13.58□□□□□ -0.24
UPF1-209ENST00000600310 RNASE7Q9H1E1 156 aaKnown RBP13.58□□□□□ -0.24
UPF1-209ENST00000600310 PHLDA3Q9Y5J5 127 aa13.58□□□□□ -0.24
UPF1-209ENST00000600310 XKRY2A2RUG3 117 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 SNAI2O43623 268 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 OR5AL1P0C617 328 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 DMRTA1Q5VZB9 504 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 SYT8Q8NBV8 401 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 OR4C5Q8NGB2 326 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 ZNF479Q96JC4 524 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 NAT8Q9UHE5 227 aa13.57□□□□□ -0.24
UPF1-209ENST00000600310 MUC4Q99102 2169 aa13.56□□□□□ -0.24
UPF1-209ENST00000600310 RS1O15537 224 aa13.56□□□□□ -0.24
UPF1-209ENST00000600310 SFTA3P0C7M3 94 aa13.56□□□□□ -0.24
UPF1-209ENST00000600310 FHL2Q14192 279 aa13.56□□□□□ -0.24
UPF1-209ENST00000600310 ZFP82Q8N141 532 aa13.56□□□□□ -0.24
UPF1-209ENST00000600310 RPP21Q9H633 154 aaKnown RBP13.56□□□□□ -0.24
UPF1-209ENST00000600310 CIDEAO60543 219 aa13.55□□□□□ -0.24
UPF1-209ENST00000600310 IGLC6P0CF74 106 aa13.55□□□□□ -0.24
UPF1-209ENST00000600310 GZMBP10144 247 aa13.55□□□□□ -0.24
UPF1-209ENST00000600310 SLAQ13239 276 aa13.55□□□□□ -0.24
UPF1-209ENST00000600310 CFAP126Q5VTH2 177 aa13.55□□□□□ -0.24
UPF1-209ENST00000600310 STARD9Q9P2P6 4700 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 TRAV26-1A0A087WT03 109 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 A8MWV9 139 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 H3BNG1 76 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 ERVFC1-1P60608 527 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 RPL23P62829 140 aaKnown RBP13.54□□□□□ -0.24
UPF1-209ENST00000600310 FER1L6-AS1Q8NA97 138 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 C15orf53Q8NAA6 179 aa13.54□□□□□ -0.24
UPF1-209ENST00000600310 TRGV4A0A0C4DH28 118 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 M0R381 172 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 GATCO43716 136 aaKnown RBP13.53□□□□□ -0.24
UPF1-209ENST00000600310 NXPH4O95158 308 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 UQCC3Q6UW78 93 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 OR10AG1Q8NH19 301 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 ISOC2Q96AB3 205 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 OSTCQ9NRP0 149 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 PRO0255Q9UI72 69 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 HHLA3Q9XRX5 114 aa13.53□□□□□ -0.24
UPF1-209ENST00000600310 CSMD3Q7Z407 3707 aa13.52□□□□□ -0.25
UPF1-209ENST00000600310 A0A0J9YY99 117 aa13.52□□□□□ -0.25
UPF1-209ENST00000600310 CRYBA4P53673 196 aa13.52□□□□□ -0.25
UPF1-209ENST00000600310 CT83Q5H943 113 aa13.52□□□□□ -0.25
UPF1-209ENST00000600310 VSIG2Q96IQ7 327 aa13.52□□□□□ -0.25
UPF1-209ENST00000600310 A0A1W2PPQ1 181 aa13.51□□□□□ -0.25
UPF1-209ENST00000600310 LINC00862A6NCI5 91 aa13.51□□□□□ -0.25
UPF1-209ENST00000600310 F2Z2F3 143 aa13.51□□□□□ -0.25
UPF1-209ENST00000600310 ADIRFQ15847 76 aa13.51□□□□□ -0.25
UPF1-209ENST00000600310 SFRP2Q96HF1 295 aa13.51□□□□□ -0.25
UPF1-209ENST00000600310 JPT2Q9H910 190 aa13.51□□□□□ -0.25
UPF1-209ENST00000600310 LCE6AA0A183 80 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 A8MWL6 223 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 PAX4O43316 350 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 SPANXN1Q5VSR9 72 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 ZFP2Q6ZN57 461 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 TPPP3Q9BW30 176 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 SAMD10Q9BYL1 202 aa13.5□□□□□ -0.25
UPF1-209ENST00000600310 MUC21A0A0G2JKD1 596 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 MUC21A0A140T8X8 626 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 NUDT3O95989 172 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 GATA1P15976 413 aaPredicted RBP13.49□□□□□ -0.25
UPF1-209ENST00000600310 CACNG7P62955 275 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 LGALS9CQ6DKI2 356 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 UFSP1Q6NVU6 142 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 COMMD7Q86VX2 200 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 C15orf54Q8N8G6 183 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 LINC00476Q8WZB0 136 aa13.49□□□□□ -0.25
UPF1-209ENST00000600310 DYNC2H1Q8NCM8 4307 aaKnown RBP13.49□□□□□ -0.25
UPF1-209ENST00000600310 IGHV3-73A0A0B4J1V6 119 aa13.48□□□□□ -0.25
UPF1-209ENST00000600310 RHODO00212 210 aa13.48□□□□□ -0.25
UPF1-209ENST00000600310 CTRLP40313 264 aa13.48□□□□□ -0.25
UPF1-209ENST00000600310 WDR73Q6P4I2 378 aa13.48□□□□□ -0.25
UPF1-209ENST00000600310 LYZL1Q6UWQ5 148 aa13.48□□□□□ -0.25
UPF1-209ENST00000600310 GTSF1Q8WW33 167 aa13.48□□□□□ -0.25
UPF1-209ENST00000600310 TENM2Q9NT68 2774 aa13.47□□□□□ -0.25
UPF1-209ENST00000600310 CRYGDP07320 174 aa13.47□□□□□ -0.25
UPF1-209ENST00000600310 FOXA3P55318 350 aaPredicted RBP13.47□□□□□ -0.25
UPF1-209ENST00000600310 OR10G8Q8NGN5 311 aa13.47□□□□□ -0.25
UPF1-209ENST00000600310 V9GYV3 84 aa13.47□□□□□ -0.25
UPF1-209ENST00000600310 TRBV6-4A0A1B0GX49 114 aa13.46□□□□□ -0.25
UPF1-209ENST00000600310 TMEM218A2RU14 115 aa13.46□□□□□ -0.25
UPF1-209ENST00000600310 SSTP61278 116 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms