RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 UBE2G2P60604 165 aa8.42□□□□□ -1.06
TRIM28-212ENST00000597995 SH2D6Q7Z4S9 175 aa8.42□□□□□ -1.06
TRIM28-212ENST00000597995 NTN5Q8WTR8 489 aaPredicted RBP8.42□□□□□ -1.06
TRIM28-212ENST00000597995 KCNS1Q96KK3 526 aa8.42□□□□□ -1.06
TRIM28-212ENST00000597995 NDFIP1Q9BT67 221 aa8.42□□□□□ -1.06
TRIM28-212ENST00000597995 IGLV5-52A0A0A0MRZ9 124 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 FAM74A7A6NL05 159 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 K7EQM0 130 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 PFN1P07737 140 aaKnown RBP8.41□□□□□ -1.06
TRIM28-212ENST00000597995 RNASE3P12724 160 aaKnown RBP8.41□□□□□ -1.06
TRIM28-212ENST00000597995 TIRAPP58753 221 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 SMUG1Q53HV7 270 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 AKR1C8PQ5T2L2 129 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 Q6ZSN1 163 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 KCNRGQ8N5I3 272 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 OR4C5Q8NGB2 326 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 C9orf85Q96MD7 179 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 BOLA1Q9Y3E2 137 aa8.41□□□□□ -1.06
TRIM28-212ENST00000597995 IGKV3D-20A0A0C4DH25 116 aa8.4□□□□□ -1.06
TRIM28-212ENST00000597995 LRCOL1A6NCL2 159 aa8.4□□□□□ -1.06
TRIM28-212ENST00000597995 PGPEP1LA6NFU8 196 aa8.4□□□□□ -1.06
TRIM28-212ENST00000597995 FBLL1A6NHQ2 334 aaKnown RBP8.4□□□□□ -1.06
TRIM28-212ENST00000597995 PEX7O00628 323 aa8.4□□□□□ -1.06
TRIM28-212ENST00000597995 GATA1P15976 413 aaPredicted RBP8.4□□□□□ -1.06
TRIM28-212ENST00000597995 CRIP1P50238 77 aa8.4□□□□□ -1.06
TRIM28-212ENST00000597995 ARL2-SNX15V9GYD0 113 aa8.4□□□□□ -1.06
TRIM28-212ENST00000597995 MAP1LC3B2A6NCE7 125 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 RS1O15537 224 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 PSCAO43653 123 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 IFNA7P01567 189 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 ZNF345Q14585 488 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 ZNF876PQ49A33 203 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 SAPCD1Q5SSQ6 148 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 CFAP126Q5VTH2 177 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 MAP1LC3BQ9GZQ8 125 aa8.39□□□□□ -1.07
TRIM28-212ENST00000597995 IGHV3-38A0A0C4DH36 116 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 HMSDA8MTL9 139 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 IBA57-AS1B1ANH7 110 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 C1QBP02746 253 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 LINC01556Q5JQF7 62 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 ZNF506Q5JVG8 444 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 Q86TA4 180 aa8.38□□□□□ -1.07
TRIM28-212ENST00000597995 ZFP69Q49AA0 526 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 COX8CQ7Z4L0 72 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 Q8N814 137 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 SLC25A29Q8N8R3 303 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 HIST1H2BAQ96A08 127 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 PTH2Q96A98 100 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 ZC2HC1AQ96GY0 325 aa8.37□□□□□ -1.07
TRIM28-212ENST00000597995 NKX6-2Q9C056 277 aaPredicted RBP8.37□□□□□ -1.07
TRIM28-212ENST00000597995 IGHV3-73A0A0B4J1V6 119 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 FABP5P3A8MUU1 101 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 J3QL48 77 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 CIDEAO60543 219 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 SEC11BP0C7V7 166 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 PPT1P50897 306 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 HAMPP81172 84 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 NHLRC2Q8NBF2 726 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 MBD3L1Q8WWY6 194 aa8.36□□□□□ -1.07
TRIM28-212ENST00000597995 TRAV8-6A0A0B4J262 113 aa8.35□□□□□ -1.07
TRIM28-212ENST00000597995 BCL2L11O43521 198 aa8.35□□□□□ -1.07
TRIM28-212ENST00000597995 JPT2Q9H910 190 aa8.35□□□□□ -1.07
TRIM28-212ENST00000597995 A0A0D9SG52 128 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 TRBV6-1A0A0K0K1D8 114 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 TRBV6-4A0A1B0GX49 114 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 KANTRA0A1W2PQU2 76 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 KRBOX1C9JBD0 128 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 PAGE4O60829 102 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 SH2D1AO60880 128 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 PFDN1O60925 122 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 DNLZQ5SXM8 178 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 CST9LP1Q5W188 147 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 UFSP1Q6NVU6 142 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 FAM213BQ8TBF2 198 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 SFT2D1Q8WV19 159 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 ZNF471Q9BX82 626 aaPredicted RBP8.34□□□□□ -1.07
TRIM28-212ENST00000597995 FAM30AQ9NZY2 134 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 Q9UF83 564 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 ZFP30Q9Y2G7 519 aa8.34□□□□□ -1.07
TRIM28-212ENST00000597995 A0A1B0GV50 99 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 B4DEV8 164 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 M0R036 132 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 LTAP01374 205 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 PLA2G1BP04054 148 aaKnown RBP8.33□□□□□ -1.08
TRIM28-212ENST00000597995 ZNF674Q2M3X9 581 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 DMRTA1Q5VZB9 504 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 TMUB2Q71RG4 321 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 STOML3Q8TAV4 291 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 FMC1Q96HJ9 113 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 PRADC1Q9BSG0 188 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 TM2D2Q9BX73 214 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 SAMD10Q9BYL1 202 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 PARLQ9H300 379 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 Q9HAA7 133 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 IL36BQ9NZH7 164 aa8.33□□□□□ -1.08
TRIM28-212ENST00000597995 GRIFINA4D1Z8 144 aa8.32□□□□□ -1.08
TRIM28-212ENST00000597995 KRTAP29-1A8MX34 341 aaPredicted RBP8.32□□□□□ -1.08
TRIM28-212ENST00000597995 UMAD1C9J7I0 102 aa8.32□□□□□ -1.08
TRIM28-212ENST00000597995 H3BVH4 76 aa8.32□□□□□ -1.08
TRIM28-212ENST00000597995 S100A4P26447 101 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms