RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 HHLA3Q9XRX5 114 aa11.71□□□□□ -0.53
UPF1-204ENST00000596842 RAXQ9Y2V3 346 aa11.71□□□□□ -0.53
UPF1-204ENST00000596842 IGLL5B9A064 214 aa11.71□□□□□ -0.53
UPF1-204ENST00000596842 K7ENP7 123 aa11.71□□□□□ -0.53
UPF1-204ENST00000596842 XGP55808 180 aa11.71□□□□□ -0.54
UPF1-204ENST00000596842 POLQO75417 2590 aa11.71□□□□□ -0.54
UPF1-204ENST00000596842 LINC01549A6NIU2 74 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 TCTEX1D4Q5JR98 221 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 ZNF575Q86XF7 245 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 EEF1AKMT3Q96AZ1 226 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 RPL39LQ96EH5 51 aaKnown RBP11.7□□□□□ -0.54
UPF1-204ENST00000596842 PHLDA3Q9Y5J5 127 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 VPS13CQ709C8 3753 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 ADORA2A-AS1P86434 159 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 PAX8Q06710 450 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 Q8N8P6 123 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 SCGB3A1Q96QR1 104 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 C2CD3Q4AC94 2353 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 FAM208BQ5VWN6 2430 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 A0A1W2PPR1 153 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 RNASE4P34096 147 aaKnown RBP11.7□□□□□ -0.54
UPF1-204ENST00000596842 Q6ZUT4 128 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 ZFAND3Q9H8U3 227 aa11.7□□□□□ -0.54
UPF1-204ENST00000596842 A8MWV9 139 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 CCDC179H3BU77 68 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 TRBV12-3P01733 135 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 FOXI1Q12951 378 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 OR11H12B2RN74 326 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 IGKV3-20P01619 116 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 PRR9Q5T870 116 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 OR11H1Q8NG94 326 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 OR11H2Q8NH07 326 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 FAM110DQ8TAY7 271 aaPredicted RBP11.69□□□□□ -0.54
UPF1-204ENST00000596842 SLC50A1Q9BRV3 221 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 ATP5LO75964 103 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 C12orf74Q32Q52 190 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 LINC01559Q495D7 138 aa11.69□□□□□ -0.54
UPF1-204ENST00000596842 IGHV4-39P01824 125 aa11.68□□□□□ -0.54
UPF1-204ENST00000596842 RAX2Q96IS3 184 aa11.68□□□□□ -0.54
UPF1-204ENST00000596842 SMPXQ9UHP9 88 aa11.68□□□□□ -0.54
UPF1-204ENST00000596842 F5H697 171 aa11.68□□□□□ -0.54
UPF1-204ENST00000596842 FAM159AQ6UWV7 190 aa11.68□□□□□ -0.54
UPF1-204ENST00000596842 CLPSL1A2RUU4 121 aa11.67□□□□□ -0.54
UPF1-204ENST00000596842 SRSF1Q07955 248 aaKnown RBP eCLIP11.67□□□□□ -0.54
UPF1-204ENST00000596842 UNQ9165/PRO28630Q6UXU0 137 aa11.67□□□□□ -0.54
UPF1-204ENST00000596842 C10orf126Q8N4M7 172 aa11.67□□□□□ -0.54
UPF1-204ENST00000596842 DLX4Q92988 240 aaPredicted RBP11.67□□□□□ -0.54
UPF1-204ENST00000596842 ACACBO00763 2458 aa11.67□□□□□ -0.54
UPF1-204ENST00000596842 TMEM95Q3KNT9 176 aa11.67□□□□□ -0.54
UPF1-204ENST00000596842 TLN2Q9Y4G6 2542 aa11.67□□□□□ -0.54
UPF1-204ENST00000596842 SETD2Q9BYW2 2564 aaPredicted RBP11.67□□□□□ -0.54
UPF1-204ENST00000596842 GNRH2O43555 120 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 MINOS1Q5TGZ0 78 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 CEND1Q8N111 149 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 ERG28Q9UKR5 140 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 MINOS1-NBL1R4GNA1 71 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 Q8N6K4 173 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 LY6DQ14210 128 aa11.66□□□□□ -0.54
UPF1-204ENST00000596842 NACAE9PAV3 2078 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 IGHV7-4-1A0A0J9YVY3 117 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 C9JAW5 83 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 M0QXV9 152 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 TSPAN13O95857 204 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 FAM74A4Q5TZK3 123 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 OR10J6PQ8NGY7 276 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 C20orf173Q96LM9 149 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 USP9XQ93008 2570 aaPredicted RBP11.65□□□□□ -0.54
UPF1-204ENST00000596842 IFITM1P13164 125 aa11.65□□□□□ -0.54
UPF1-204ENST00000596842 MYO9AB2RTY4 2548 aa11.65□□□□□ -0.55
UPF1-204ENST00000596842 NRACQ8N912 160 aa11.64□□□□□ -0.55
UPF1-204ENST00000596842 CRYBG3Q68DQ2 2970 aa11.64□□□□□ -0.55
UPF1-204ENST00000596842 TRAV41A0A0B4J266 112 aa11.64□□□□□ -0.55
UPF1-204ENST00000596842 SIRPDQ9H106 197 aa11.64□□□□□ -0.55
UPF1-204ENST00000596842 HLA-DRB4P13762 266 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 SMIM2Q9BVW6 85 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 HLA-DRB4X5D2U9 266 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 NPFFO15130 113 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 PRSS2P07478 247 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 UBE2E1P51965 193 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 KLHL30-AS1Q8NEE0 82 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 A0A087WWL8 130 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 CENPVL3A0A0U1RRI6 287 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 LYRM7Q5U5X0 104 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 PTPN13Q12923 2485 aa11.63□□□□□ -0.55
UPF1-204ENST00000596842 MYO18BQ8IUG5 2567 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 A0A087WX48 190 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 SUMO2P61956 95 aaKnown RBP11.62□□□□□ -0.55
UPF1-204ENST00000596842 JPT2Q9H910 190 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 HTN1P15515 57 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 ASIPP42127 132 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 ZFP2Q6ZN57 461 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 C2orf66Q6UXQ4 117 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 PPDPFLQ8WWR9 84 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 CNFNQ9BYD5 112 aa11.62□□□□□ -0.55
UPF1-204ENST00000596842 A6NJY4 79 aa11.61□□□□□ -0.55
UPF1-204ENST00000596842 OOSP1A8MZH6 123 aa11.61□□□□□ -0.55
UPF1-204ENST00000596842 C11orf71Q6IPW1 123 aa11.61□□□□□ -0.55
UPF1-204ENST00000596842 IGLV2-18A0A075B6J9 118 aa11.61□□□□□ -0.55
UPF1-204ENST00000596842 ZNF815PA8K554 130 aa11.61□□□□□ -0.55
UPF1-204ENST00000596842 SPATA25Q9BR10 227 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms