RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 FAM162BQ5T6X4 162 aa12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 LYPD5Q6UWN5 251 aa12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 TCTE3Q8IZS6 198 aa12.2□□□□□ -0.46
SHKBP1-204ENST00000594862 TEX46H3BTG2 121 aa12.19□□□□□ -0.46
SHKBP1-204ENST00000594862 RS1O15537 224 aa12.19□□□□□ -0.46
SHKBP1-204ENST00000594862 PAGE4O60829 102 aa12.19□□□□□ -0.46
SHKBP1-204ENST00000594862 LTAP01374 205 aa12.19□□□□□ -0.46
SHKBP1-204ENST00000594862 PRADC1Q9BSG0 188 aa12.19□□□□□ -0.46
SHKBP1-204ENST00000594862 RYR1P21817 5038 aa12.19□□□□□ -0.46
SHKBP1-204ENST00000594862 PKHD1P08F94 4074 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 TRAV9-2A0A087WT02 112 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 TRBV6-4A0A1B0GX49 114 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 A8MWV9 139 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 B4DEV8 164 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 RNASE3P12724 160 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 RHOHQ15669 191 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 ZNF506Q5JVG8 444 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 DNLZQ5SXM8 178 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 CFAP126Q5VTH2 177 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 ZC2HC1AQ96GY0 325 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 IL36BQ9NZH7 164 aa12.18□□□□□ -0.46
SHKBP1-204ENST00000594862 IGKV3D-20A0A0C4DH25 116 aa12.17□□□□□ -0.46
SHKBP1-204ENST00000594862 MGST1P10620 155 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-204ENST00000594862 TIRAPP58753 221 aa12.17□□□□□ -0.46
SHKBP1-204ENST00000594862 SYT8Q8NBV8 401 aa12.17□□□□□ -0.46
SHKBP1-204ENST00000594862 KRTAP1-5Q9BYS1 174 aa12.17□□□□□ -0.46
SHKBP1-204ENST00000594862 MANBALQ9NQG1 85 aa12.17□□□□□ -0.46
SHKBP1-204ENST00000594862 SH2D1AO60880 128 aa12.16□□□□□ -0.46
SHKBP1-204ENST00000594862 ZNF674Q2M3X9 581 aa12.16□□□□□ -0.46
SHKBP1-204ENST00000594862 ZFP2Q6ZN57 461 aa12.16□□□□□ -0.46
SHKBP1-204ENST00000594862 NHLRC2Q8NBF2 726 aa12.16□□□□□ -0.46
SHKBP1-204ENST00000594862 FAT2Q9NYQ8 4349 aa12.16□□□□□ -0.46
SHKBP1-204ENST00000594862 TRAV1-1A0A0B4J248 108 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 PGPEP1LA6NFU8 196 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 KRBOX1C9JBD0 128 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 TNP2Q05952 138 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 LINC01559Q495D7 138 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 LY96Q9Y6Y9 160 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 DNAH2Q9P225 4427 aa12.15□□□□□ -0.46
SHKBP1-204ENST00000594862 A0A1B0GV50 99 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 RHODO00212 210 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 C1QBP02746 253 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 MED14OSP0DP75 135 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 Q6ZNX1 250 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 NFE4Q86UQ8 179 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 SLC25A29Q8N8R3 303 aa12.14□□□□□ -0.47
SHKBP1-204ENST00000594862 DNAH17Q9UFH2 4485 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 H3BVH4 76 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 M0R036 132 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 EVI2AP22794 236 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 CRIP1P50238 77 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 SLC51BQ86UW2 128 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 C10orf126Q8N4M7 172 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 PARLQ9H300 379 aa12.13□□□□□ -0.47
SHKBP1-204ENST00000594862 SCO2A0A1W2PP80 73 aa12.12□□□□□ -0.47
SHKBP1-204ENST00000594862 DNAH10OSP0CZ25 163 aa12.12□□□□□ -0.47
SHKBP1-204ENST00000594862 LINC00315P59091 139 aa12.12□□□□□ -0.47
SHKBP1-204ENST00000594862 PHLDA3Q9Y5J5 127 aa12.12□□□□□ -0.47
SHKBP1-204ENST00000594862 IFNA1P01562 189 aa12.11□□□□□ -0.47
SHKBP1-204ENST00000594862 CXCL1P09341 107 aa12.11□□□□□ -0.47
SHKBP1-204ENST00000594862 ARMS2P0C7Q2 107 aa12.11□□□□□ -0.47
SHKBP1-204ENST00000594862 SULT1A2P50226 295 aa12.11□□□□□ -0.47
SHKBP1-204ENST00000594862 AKAP14Q86UN6 197 aa12.11□□□□□ -0.47
SHKBP1-204ENST00000594862 BAGE2Q86Y30 109 aa12.11□□□□□ -0.47
SHKBP1-204ENST00000594862 IGHV3-73A0A0B4J1V6 119 aa12.1□□□□□ -0.47
SHKBP1-204ENST00000594862 TRAV8-6A0A0B4J262 113 aa12.1□□□□□ -0.47
SHKBP1-204ENST00000594862 LOC100131303A0A0U1RQF7 123 aa12.1□□□□□ -0.47
SHKBP1-204ENST00000594862 ZFP82Q8N141 532 aa12.1□□□□□ -0.47
SHKBP1-204ENST00000594862 C11orf52Q96A22 123 aa12.1□□□□□ -0.47
SHKBP1-204ENST00000594862 GNG13Q9P2W3 67 aa12.1□□□□□ -0.47
SHKBP1-204ENST00000594862 WFDC10BQ8IUB3 73 aa12.09□□□□□ -0.47
SHKBP1-204ENST00000594862 MLST8Q9BVC4 326 aa12.09□□□□□ -0.47
SHKBP1-204ENST00000594862 SCRT2Q9NQ03 307 aa12.09□□□□□ -0.47
SHKBP1-204ENST00000594862 GRIFINA4D1Z8 144 aa12.08□□□□□ -0.48
SHKBP1-204ENST00000594862 TAGLN2P37802 199 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-204ENST00000594862 TMSB15BA0A087X1C1 80 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 IGHV3-38A0A0C4DH36 116 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 C16orf90A8MZG2 172 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 EREGO14944 169 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 PDE6DO43924 150 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 RPL35P42766 123 aaKnown RBP12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 ATP6V0E2Q8NHE4 81 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 SMIM12Q96EX1 92 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 GTSF1LQ9H1H1 148 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 MSRB1Q9NZV6 116 aa12.07□□□□□ -0.48
SHKBP1-204ENST00000594862 ERVFC1-1P60608 527 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 MEF2BQ02080 365 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 LINC01556Q5JQF7 62 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 OR10J3Q5JRS4 329 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 LELP1Q5T871 98 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 DMRTA1Q5VZB9 504 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 UFSP1Q6NVU6 142 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 Q6ZRN7 208 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 SFRP2Q96HF1 295 aa12.06□□□□□ -0.48
SHKBP1-204ENST00000594862 PKD1P98161 4303 aa12.05□□□□□ -0.48
SHKBP1-204ENST00000594862 M0R381 172 aa12.05□□□□□ -0.48
SHKBP1-204ENST00000594862 CRYGDP07320 174 aa12.05□□□□□ -0.48
SHKBP1-204ENST00000594862 CCL20P78556 96 aa12.05□□□□□ -0.48
SHKBP1-204ENST00000594862 ZNF575Q86XF7 245 aa12.05□□□□□ -0.48
SHKBP1-204ENST00000594862 A0A087WWC5 75 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms