RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TPT1P13693 172 aaKnown RBP7.23□□□□□ -1.25
LIG3-212ENST00000590181 UBE2G1P62253 170 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 FAM162BQ5T6X4 162 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 Q6ZQT7 251 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 C9orf85Q96MD7 179 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 C8orf49Q96NF6 230 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 IL36BQ9NZH7 164 aa7.23□□□□□ -1.25
LIG3-212ENST00000590181 TRAV1-1A0A0B4J248 108 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 K7EQD1 137 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 RS1O15537 224 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 PFDN1O60925 122 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 EVI2AP22794 236 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 S100A4P26447 101 aaKnown RBP7.22□□□□□ -1.25
LIG3-212ENST00000590181 ASIPP42127 132 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 SFT2D1Q8WV19 159 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 ZNF479Q96JC4 524 aa7.22□□□□□ -1.25
LIG3-212ENST00000590181 ZNF471Q9BX82 626 aaPredicted RBP7.22□□□□□ -1.25
LIG3-212ENST00000590181 EREGO14944 169 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 EIF3GO75821 320 aaKnown RBP eCLIP7.21□□□□□ -1.26
LIG3-212ENST00000590181 NXPH4O95158 308 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 LTAP01374 205 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 IGHV3-53P01767 116 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 H2AFB1P0C5Y9 115 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 GYPEP15421 78 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 GATA1P15976 413 aaPredicted RBP7.21□□□□□ -1.26
LIG3-212ENST00000590181 ZNF80P51504 273 aaPredicted RBP7.21□□□□□ -1.26
LIG3-212ENST00000590181 RHOHQ15669 191 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 CST9LP1Q5W188 147 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 SYT8Q8NBV8 401 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 LY96Q9Y6Y9 160 aa7.21□□□□□ -1.26
LIG3-212ENST00000590181 RHODO00212 210 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 CXCL1P09341 107 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 SFTA3P0C7M3 94 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 TAGLN2P37802 199 aaKnown RBP7.2□□□□□ -1.26
LIG3-212ENST00000590181 FGF8P55075 233 aaPredicted RBP7.2□□□□□ -1.26
LIG3-212ENST00000590181 UBE2G2P60604 165 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 TNP2Q05952 138 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 ZNF674Q2M3X9 581 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 CFAP126Q5VTH2 177 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 TMUB2Q71RG4 321 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 Q86TA4 180 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 TCTE3Q8IZS6 198 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 Q8N1X5 172 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 SGK494Q96LW2 274 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 MANBALQ9NQG1 85 aa7.2□□□□□ -1.26
LIG3-212ENST00000590181 A0A087WWC5 75 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 TRAV8-6A0A0B4J262 113 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 B4DEV8 164 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 DNAH10OSP0CZ25 163 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 RNASE3P12724 160 aaKnown RBP7.19□□□□□ -1.26
LIG3-212ENST00000590181 AKR1C3P42330 323 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 OR11H4Q8NGC9 324 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 FAM213BQ8TBF2 198 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 SMIM12Q96EX1 92 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 C11orf21Q9P2W6 132 aa7.19□□□□□ -1.26
LIG3-212ENST00000590181 TRAV34A0A0B4J273 112 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 KRBOX1C9JBD0 128 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 PAGE4O60829 102 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 LINC01559Q495D7 138 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 ZNF506Q5JVG8 444 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 SLC25A29Q8N8R3 303 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 LINC00479Q96M42 142 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 SCRT2Q9NQ03 307 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 BIN3Q9NQY0 253 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 PGPEP1Q9NXJ5 209 aa7.18□□□□□ -1.26
LIG3-212ENST00000590181 IGKV3D-20A0A0C4DH25 116 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 CDPF1Q6NVV7 123 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 SLC51BQ86UW2 128 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 NHLRC2Q8NBF2 726 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 ZC2HC1AQ96GY0 325 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 GTSF1LQ9H1H1 148 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 PHLDA3Q9Y5J5 127 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 VPS13BQ7Z7G8 4022 aa7.17□□□□□ -1.26
LIG3-212ENST00000590181 IGHV3-38A0A0C4DH36 116 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 PGPEP1LA6NFU8 196 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 PDE6DO43924 150 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 IFNA1P01562 189 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 C1QBP02746 253 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 LINC01556Q5JQF7 62 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 LELP1Q5T871 98 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 BAGE2Q86Y30 109 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 ZFP82Q8N141 532 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 ATP6V0E2Q8NHE4 81 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 MLST8Q9BVC4 326 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 MSRB1Q9NZV6 116 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 MYCBP2O75592 4640 aa7.16□□□□□ -1.26
LIG3-212ENST00000590181 TRBV10-1A0A0K0K1A3 114 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 SMLR1H3BR10 107 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 SH2D1AO60880 128 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 ARMS2P0C7Q2 107 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 SULT1A2P50226 295 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 LINC00315P59091 139 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 ERVFC1-1P60608 527 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 LAGE3Q14657 143 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.15□□□□□ -1.26
LIG3-212ENST00000590181 SFRP2Q96HF1 295 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 PARLQ9H300 379 aa7.15□□□□□ -1.26
LIG3-212ENST00000590181 XKRY2A2RUG3 117 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 CRYGDP07320 174 aa7.14□□□□□ -1.27
LIG3-212ENST00000590181 CRIP1P50238 77 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms