RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 FAM74A7A6NL05 159 aa14.58□□□□□ -0.08
SHMT1-210ENST00000583780 CRYGDP07320 174 aa14.58□□□□□ -0.08
SHMT1-210ENST00000583780 SRIP30626 198 aa14.58□□□□□ -0.08
SHMT1-210ENST00000583780 NTN5Q8WTR8 489 aaPredicted RBP14.58□□□□□ -0.08
SHMT1-210ENST00000583780 TVP23CQ96ET8 276 aa14.58□□□□□ -0.08
SHMT1-210ENST00000583780 TRGV4A0A0C4DH28 118 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 GYPEP15421 78 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 Q6AWC8 147 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 DPPA3Q6W0C5 159 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 PRNTQ86SH4 94 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 NAGKQ9UJ70 344 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 PSG8Q9UQ74 426 aa14.57□□□□□ -0.08
SHMT1-210ENST00000583780 FLI1Q01543 452 aaPredicted RBP14.56□□□□□ -0.08
SHMT1-210ENST00000583780 ZFP69Q49AA0 526 aa14.56□□□□□ -0.08
SHMT1-210ENST00000583780 CST9LP1Q5W188 147 aa14.56□□□□□ -0.08
SHMT1-210ENST00000583780 TMEM75Q8N9X5 138 aa14.56□□□□□ -0.08
SHMT1-210ENST00000583780 MBD3L1Q8WWY6 194 aa14.56□□□□□ -0.08
SHMT1-210ENST00000583780 TRAV34A0A0B4J273 112 aa14.55□□□□□ -0.08
SHMT1-210ENST00000583780 PEX7O00628 323 aa14.55□□□□□ -0.08
SHMT1-210ENST00000583780 H2AFB1P0C5Y9 115 aa14.55□□□□□ -0.08
SHMT1-210ENST00000583780 EIF5AL1Q6IS14 154 aaKnown RBP14.55□□□□□ -0.08
SHMT1-210ENST00000583780 C10orf126Q8N4M7 172 aa14.55□□□□□ -0.08
SHMT1-210ENST00000583780 Q8N814 137 aa14.55□□□□□ -0.08
SHMT1-210ENST00000583780 RASL10AQ92737 203 aa14.55□□□□□ -0.08
SHMT1-210ENST00000583780 NKX6-2Q9C056 277 aaPredicted RBP14.55□□□□□ -0.08
SHMT1-210ENST00000583780 LRP1Q07954 4544 aaKnown RBP14.55□□□□□ -0.08
SHMT1-210ENST00000583780 IGLV2-11P01706 119 aa14.54□□□□□ -0.08
SHMT1-210ENST00000583780 ZNF415Q09FC8 603 aa14.54□□□□□ -0.08
SHMT1-210ENST00000583780 FAM159AQ6UWV7 190 aa14.54□□□□□ -0.08
SHMT1-210ENST00000583780 SLC51BQ86UW2 128 aa14.54□□□□□ -0.08
SHMT1-210ENST00000583780 C9orf62Q8N4C0 152 aa14.54□□□□□ -0.08
SHMT1-210ENST00000583780 LINC00479Q96M42 142 aa14.54□□□□□ -0.08
SHMT1-210ENST00000583780 TRAV21A0A0B4J279 112 aa14.53□□□□□ -0.08
SHMT1-210ENST00000583780 PAGE4O60829 102 aa14.53□□□□□ -0.08
SHMT1-210ENST00000583780 ORM1P02763 201 aa14.53□□□□□ -0.08
SHMT1-210ENST00000583780 PPT1P50897 306 aa14.53□□□□□ -0.08
SHMT1-210ENST00000583780 TMEM183BQ1AE95 376 aa14.53□□□□□ -0.08
SHMT1-210ENST00000583780 TMEM183AQ8IXX5 376 aa14.53□□□□□ -0.08
SHMT1-210ENST00000583780 IBA57-AS1B1ANH7 110 aa14.52□□□□□ -0.09
SHMT1-210ENST00000583780 PSCAO43653 123 aa14.52□□□□□ -0.09
SHMT1-210ENST00000583780 HIST1H2BAQ96A08 127 aa14.52□□□□□ -0.09
SHMT1-210ENST00000583780 LOC100131303A0A0U1RQF7 123 aa14.51□□□□□ -0.09
SHMT1-210ENST00000583780 FBLL1A6NHQ2 334 aaKnown RBP14.51□□□□□ -0.09
SHMT1-210ENST00000583780 GCGP01275 180 aa14.51□□□□□ -0.09
SHMT1-210ENST00000583780 PCNPQ8WW12 178 aaKnown RBP14.51□□□□□ -0.09
SHMT1-210ENST00000583780 ARL2-SNX15V9GYD0 113 aa14.51□□□□□ -0.09
SHMT1-210ENST00000583780 HMCN2Q8NDA2 5059 aa14.51□□□□□ -0.09
SHMT1-210ENST00000583780 TRGV11A0A075B6L2 103 aa14.5□□□□□ -0.09
SHMT1-210ENST00000583780 IGHV3-38A0A0C4DH36 116 aa14.5□□□□□ -0.09
SHMT1-210ENST00000583780 PLA2G1BP04054 148 aaKnown RBP14.5□□□□□ -0.09
SHMT1-210ENST00000583780 RAB5CP51148 216 aa14.5□□□□□ -0.09
SHMT1-210ENST00000583780 ZNF80P51504 273 aaPredicted RBP14.5□□□□□ -0.09
SHMT1-210ENST00000583780 SMUG1Q53HV7 270 aa14.5□□□□□ -0.09
SHMT1-210ENST00000583780 Q86TA4 180 aa14.5□□□□□ -0.09
SHMT1-210ENST00000583780 TXNDC17Q9BRA2 123 aa14.5□□□□□ -0.09
SHMT1-210ENST00000583780 SULT1A2P50226 295 aa14.49□□□□□ -0.09
SHMT1-210ENST00000583780 LINC01556Q5JQF7 62 aa14.49□□□□□ -0.09
SHMT1-210ENST00000583780 SAPCD1Q5SSQ6 148 aa14.49□□□□□ -0.09
SHMT1-210ENST00000583780 Q6ZSA8 131 aa14.49□□□□□ -0.09
SHMT1-210ENST00000583780 DEFB104AQ8WTQ1 72 aa14.49□□□□□ -0.09
SHMT1-210ENST00000583780 UBR4Q5T4S7 5183 aa14.49□□□□□ -0.09
SHMT1-210ENST00000583780 AKR1C3P42330 323 aa14.48□□□□□ -0.09
SHMT1-210ENST00000583780 NKX2-5P52952 324 aaPredicted RBP14.48□□□□□ -0.09
SHMT1-210ENST00000583780 TIRAPP58753 221 aa14.48□□□□□ -0.09
SHMT1-210ENST00000583780 UBE2G1P62253 170 aa14.48□□□□□ -0.09
SHMT1-210ENST00000583780 SERTAD4-AS1Q5TG53 156 aa14.48□□□□□ -0.09
SHMT1-210ENST00000583780 SPXQ9BT56 116 aa14.48□□□□□ -0.09
SHMT1-210ENST00000583780 SDF2L1Q9HCN8 221 aa14.48□□□□□ -0.09
SHMT1-210ENST00000583780 C9JCJ5 164 aa14.47□□□□□ -0.09
SHMT1-210ENST00000583780 GNRH2O43555 120 aa14.47□□□□□ -0.09
SHMT1-210ENST00000583780 LINC00528Q8N1L1 170 aa14.47□□□□□ -0.09
SHMT1-210ENST00000583780 FMC1Q96HJ9 113 aa14.47□□□□□ -0.09
SHMT1-210ENST00000583780 TCEAL7Q9BRU2 100 aa14.47□□□□□ -0.09
SHMT1-210ENST00000583780 GNG13Q9P2W3 67 aa14.47□□□□□ -0.09
SHMT1-210ENST00000583780 TEX46H3BTG2 121 aa14.46□□□□□ -0.09
SHMT1-210ENST00000583780 TYMSP04818 313 aa14.46□□□□□ -0.09
SHMT1-210ENST00000583780 PFN1P07737 140 aaKnown RBP14.46□□□□□ -0.09
SHMT1-210ENST00000583780 CCL20P78556 96 aa14.46□□□□□ -0.09
SHMT1-210ENST00000583780 WFDC2Q14508 124 aa14.46□□□□□ -0.09
SHMT1-210ENST00000583780 TDRG1Q3Y452 100 aa14.46□□□□□ -0.09
SHMT1-210ENST00000583780 KCNS1Q96KK3 526 aa14.46□□□□□ -0.09
SHMT1-210ENST00000583780 TRAV4A0A0B4J268 109 aa14.45□□□□□ -0.1
SHMT1-210ENST00000583780 SCO2A0A1W2PP80 73 aa14.45□□□□□ -0.1
SHMT1-210ENST00000583780 Q9HAA7 133 aa14.45□□□□□ -0.1
SHMT1-210ENST00000583780 C11orf21Q9P2W6 132 aa14.45□□□□□ -0.1
SHMT1-210ENST00000583780 IGHV3-16A0A0C4DH30 117 aa14.44□□□□□ -0.1
SHMT1-210ENST00000583780 SH2D6Q7Z4S9 175 aa14.44□□□□□ -0.1
SHMT1-210ENST00000583780 OR4C5Q8NGB2 326 aa14.44□□□□□ -0.1
SHMT1-210ENST00000583780 MANBALQ9NQG1 85 aa14.44□□□□□ -0.1
SHMT1-210ENST00000583780 TRAV1-1A0A0B4J248 108 aa14.43□□□□□ -0.1
SHMT1-210ENST00000583780 KRTAP10-4P60372 401 aaPredicted RBP14.43□□□□□ -0.1
SHMT1-210ENST00000583780 FAT3Q8TDW7 4589 aa14.42□□□□□ -0.1
SHMT1-210ENST00000583780 ALKAL2Q6UX46 152 aa14.42□□□□□ -0.1
SHMT1-210ENST00000583780 ZC2HC1AQ96GY0 325 aa14.42□□□□□ -0.1
SHMT1-210ENST00000583780 ZFP30Q9Y2G7 519 aa14.42□□□□□ -0.1
SHMT1-210ENST00000583780 BOLA1Q9Y3E2 137 aa14.42□□□□□ -0.1
SHMT1-210ENST00000583780 GATA1P15976 413 aaPredicted RBP14.41□□□□□ -0.1
SHMT1-210ENST00000583780 TRBV6-1A0A0K0K1D8 114 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 FABP5P3A8MUU1 101 aa14.4□□□□□ -0.1
SHMT1-210ENST00000583780 LTAP01374 205 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms