RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 A0A1B0GUT8 65 aa18.11■□□□□ 0.49
SHMT1-207ENST00000580002 A0A1B0GXF2 115 aa18.11■□□□□ 0.49
SHMT1-207ENST00000580002 OR5AL1P0C617 328 aa18.11■□□□□ 0.49
SHMT1-207ENST00000580002 DMRTA1Q5VZB9 504 aa18.11■□□□□ 0.49
SHMT1-207ENST00000580002 RETNQ9HD89 108 aa18.11■□□□□ 0.49
SHMT1-207ENST00000580002 TRGV11A0A075B6L2 103 aa18.1■□□□□ 0.49
SHMT1-207ENST00000580002 DEFB121Q5J5C9 76 aa18.1■□□□□ 0.49
SHMT1-207ENST00000580002 M0R381 172 aa18.09■□□□□ 0.49
SHMT1-207ENST00000580002 RAB5AP20339 215 aa18.09■□□□□ 0.49
SHMT1-207ENST00000580002 RNASE8Q8TDE3 154 aaKnown RBP18.09■□□□□ 0.49
SHMT1-207ENST00000580002 TRAV9-1A0A075B6T8 112 aa18.09■□□□□ 0.49
SHMT1-207ENST00000580002 PLAC8L1A1L4L8 177 aa18.08■□□□□ 0.48
SHMT1-207ENST00000580002 F2Z2F3 143 aa18.08■□□□□ 0.48
SHMT1-207ENST00000580002 TWIST1Q15672 202 aa18.08■□□□□ 0.48
SHMT1-207ENST00000580002 JPT2Q9H910 190 aa18.08■□□□□ 0.48
SHMT1-207ENST00000580002 PHLDA3Q9Y5J5 127 aa18.08■□□□□ 0.48
SHMT1-207ENST00000580002 RPS10P46783 165 aaKnown RBP18.07■□□□□ 0.48
SHMT1-207ENST00000580002 SPANXN1Q5VSR9 72 aa18.07■□□□□ 0.48
SHMT1-207ENST00000580002 CNFNQ9BYD5 112 aa18.07■□□□□ 0.48
SHMT1-207ENST00000580002 TMEM136Q6ZRR5 245 aa18.07■□□□□ 0.48
SHMT1-207ENST00000580002 RCHY1Q96PM5 261 aa18.07■□□□□ 0.48
SHMT1-207ENST00000580002 UBE2CO00762 179 aa18.06■□□□□ 0.48
SHMT1-207ENST00000580002 MED14OSP0DP75 135 aa18.06■□□□□ 0.48
SHMT1-207ENST00000580002 RRN3P1Q2M238 152 aa18.06■□□□□ 0.48
SHMT1-207ENST00000580002 SBSPONQ8IVN8 264 aa18.06■□□□□ 0.48
SHMT1-207ENST00000580002 OR11H2Q8NH07 326 aa18.06■□□□□ 0.48
SHMT1-207ENST00000580002 RNF183Q96D59 192 aa18.06■□□□□ 0.48
SHMT1-207ENST00000580002 RAB4BP61018 213 aa18.05■□□□□ 0.48
SHMT1-207ENST00000580002 HBBP68871 147 aa18.05■□□□□ 0.48
SHMT1-207ENST00000580002 RIGQ13278 110 aa18.05■□□□□ 0.48
SHMT1-207ENST00000580002 MRAPQ8TCY5 172 aa18.05■□□□□ 0.48
SHMT1-207ENST00000580002 DEFB4AO15263 64 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 ZNF415Q09FC8 603 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 Q6ZWC4 215 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 EMP1P54849 157 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 ATP5L2Q7Z4Y8 100 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 IL17DQ8TAD2 202 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 TMEM263Q8WUH6 116 aaKnown RBP18.04■□□□□ 0.48
SHMT1-207ENST00000580002 BORCS7Q96B45 105 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 OVOL2Q9BRP0 275 aa18.04■□□□□ 0.48
SHMT1-207ENST00000580002 IGHV4-4A0A075B6R2 117 aa18.03■□□□□ 0.48
SHMT1-207ENST00000580002 SNURFLB1AK76 121 aa18.03■□□□□ 0.48
SHMT1-207ENST00000580002 MRPL16Q9NX20 251 aaKnown RBP18.03■□□□□ 0.48
SHMT1-207ENST00000580002 EVI2AP22794 236 aa18.02■□□□□ 0.48
SHMT1-207ENST00000580002 NOP10Q9NPE3 64 aaKnown RBP18.02■□□□□ 0.48
SHMT1-207ENST00000580002 TRGC2P03986 189 aa18.02■□□□□ 0.47
SHMT1-207ENST00000580002 ZNF876PQ49A33 203 aa18.02■□□□□ 0.47
SHMT1-207ENST00000580002 CACNG7P62955 275 aa18.01■□□□□ 0.47
SHMT1-207ENST00000580002 WDR73Q6P4I2 378 aa18.01■□□□□ 0.47
SHMT1-207ENST00000580002 TENM3Q9P273 2699 aa18.01■□□□□ 0.47
SHMT1-207ENST00000580002 NXPH4O95158 308 aa18■□□□□ 0.47
SHMT1-207ENST00000580002 FABP9Q0Z7S8 132 aa18■□□□□ 0.47
SHMT1-207ENST00000580002 SLAQ13239 276 aa18■□□□□ 0.47
SHMT1-207ENST00000580002 KIAA1644Q3SXP7 199 aa18■□□□□ 0.47
SHMT1-207ENST00000580002 C16orf74Q96GX8 76 aa18■□□□□ 0.47
SHMT1-207ENST00000580002 SAMD10Q9BYL1 202 aa18■□□□□ 0.47
SHMT1-207ENST00000580002 GNB1LQ9BYB4 327 aa17.99■□□□□ 0.47
SHMT1-207ENST00000580002 TRAPPC1Q9Y5R8 145 aa17.99■□□□□ 0.47
SHMT1-207ENST00000580002 HUWE1Q7Z6Z7 4374 aaKnown RBP17.99■□□□□ 0.47
SHMT1-207ENST00000580002 IGHV4-28A0A0C4DH34 117 aa17.99■□□□□ 0.47
SHMT1-207ENST00000580002 M0R2P5 195 aa17.99■□□□□ 0.47
SHMT1-207ENST00000580002 Q6ZTI0 123 aa17.99■□□□□ 0.47
SHMT1-207ENST00000580002 ZFP82Q8N141 532 aa17.99■□□□□ 0.47
SHMT1-207ENST00000580002 C14orf178Q8N769 122 aaPredicted RBP17.99■□□□□ 0.47
SHMT1-207ENST00000580002 AMN1Q8IY45 258 aa17.98■□□□□ 0.47
SHMT1-207ENST00000580002 FRZBQ92765 325 aa17.98■□□□□ 0.47
SHMT1-207ENST00000580002 MRPL18Q9H0U6 180 aaKnown RBP17.98■□□□□ 0.47
SHMT1-207ENST00000580002 A0A087WWL8 130 aa17.97■□□□□ 0.47
SHMT1-207ENST00000580002 PHOX2AO14813 284 aa17.97■□□□□ 0.47
SHMT1-207ENST00000580002 ZNF493Q6ZR52 646 aa17.97■□□□□ 0.47
SHMT1-207ENST00000580002 Q8NAQ8 132 aa17.97■□□□□ 0.47
SHMT1-207ENST00000580002 DNAH9Q9NYC9 4486 aa17.97■□□□□ 0.47
SHMT1-207ENST00000580002 RASL11AQ6T310 242 aa17.96■□□□□ 0.47
SHMT1-207ENST00000580002 SPXQ9BT56 116 aa17.96■□□□□ 0.47
SHMT1-207ENST00000580002 TRGV1A0A0A0MS02 117 aa17.96■□□□□ 0.47
SHMT1-207ENST00000580002 GATD1Q8NB37 220 aa17.96■□□□□ 0.47
SHMT1-207ENST00000580002 RNF185Q96GF1 192 aa17.96■□□□□ 0.47
SHMT1-207ENST00000580002 SMIM9A6NGZ8 99 aa17.95■□□□□ 0.46
SHMT1-207ENST00000580002 A0A1B0GW15 77 aa17.94■□□□□ 0.46
SHMT1-207ENST00000580002 GAS8-AS1O95177 125 aa17.94■□□□□ 0.46
SHMT1-207ENST00000580002 DAZ2Q13117 558 aaKnown RBP17.94■□□□□ 0.46
SHMT1-207ENST00000580002 TMEM191AQ9H0A3 160 aa17.94■□□□□ 0.46
SHMT1-207ENST00000580002 KIF25-AS1Q9Y6Z4 181 aa17.94■□□□□ 0.46
SHMT1-207ENST00000580002 POM121L12Q8N7R1 296 aa17.94■□□□□ 0.46
SHMT1-207ENST00000580002 MEGF8Q7Z7M0 2845 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 APCSP02743 223 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 CRYGDP07320 174 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 LINC00315P59091 139 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 FAM104BQ5XKR9 115 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 SYT8Q8NBV8 401 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 RASL10AQ92737 203 aa17.93■□□□□ 0.46
SHMT1-207ENST00000580002 IGHV3-73A0A0B4J1V6 119 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 GAGE12BA1L429 117 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 GAGE7O76087 117 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 HLA-DQA1P01909 254 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 GAGE12FP0CL80 117 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 GAGE12GP0CL81 117 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 GAGE12IP0CL82 117 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 RAB4AP20338 218 aa17.92■□□□□ 0.46
SHMT1-207ENST00000580002 SMKR1H3BMG3 65 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms