RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SMCR5Q8TEV8 140 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 DCANP1Q8TF63 244 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 DEFB104AQ8WTQ1 72 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 ADAT3Q96EY9 351 aaPredicted RBP3.41□□□□□ -1.86
VPS53-219ENST00000576019 AICDAQ9GZX7 198 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 XAGE1AQ9HD64 81 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 ANAPC11Q9NYG5 84 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 CKLFQ9UBR5 152 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 TRAPPC2LQ9UL33 140 aa3.41□□□□□ -1.86
VPS53-219ENST00000576019 RBM7Q9Y580 266 aaKnown RBP3.41□□□□□ -1.86
VPS53-219ENST00000576019 SMR3BP02814 79 aaPredicted RBP3.4□□□□□ -1.87
VPS53-219ENST00000576019 ZNF22P17026 224 aaPredicted RBP3.4□□□□□ -1.87
VPS53-219ENST00000576019 RPS3P23396 243 aaKnown RBP eCLIP3.4□□□□□ -1.87
VPS53-219ENST00000576019 S100PP25815 95 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 ZNF117Q03924 483 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 LY6EQ16553 131 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 HRCT1Q6UXD1 115 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 C4orf22Q6V702 233 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 TMEM136Q6ZRR5 245 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 CROCCP2Q86T23 111 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 ANGPTL5Q86XS5 388 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 SLAMF6Q96DU3 332 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 GPX7Q96SL4 187 aaPredicted RBP3.4□□□□□ -1.87
VPS53-219ENST00000576019 MIEN1Q9BRT3 115 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 SCRT1Q9BWW7 348 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 TUBA4BQ9H853 241 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 TPT1P8Q9HAU6 139 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 NAT8Q9UHE5 227 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 KLK12Q9UKR0 248 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 HEY1Q9Y5J3 304 aa3.4□□□□□ -1.87
VPS53-219ENST00000576019 A0A1W2PQD3 144 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 GGTLC3B5MD39 225 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 H3BT86 120 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 SULT1C4O75897 302 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 NPYP01303 97 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 GPX2P18283 190 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 POLR2HP52434 150 aaKnown RBP3.39□□□□□ -1.87
VPS53-219ENST00000576019 MIAQ16674 131 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 SMIM21Q3B7S5 101 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 LINC01554Q52M75 96 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 SPANXN3Q5MJ09 141 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 SPINT4Q6UDR6 99 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 Q8NAQ8 132 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 C1orf64Q8NEQ6 169 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 OR4X2Q8NGF9 303 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 OR8D4Q8NGM9 314 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 KRTAP2-2Q9BYT5 123 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 DSPPQ9NZW4 1301 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 NACAE9PAV3 2078 aa3.39□□□□□ -1.87
VPS53-219ENST00000576019 IGHV3-15A0A0B4J1V0 119 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 RPL36A-HNRNPH2H7BZ11 118 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 J3KT08 172 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 OR2T1O43869 369 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 GADD45GO95257 159 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 IGHV3-7P01780 117 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 XCL1P47992 114 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 HIST1H4AP62805 103 aaKnown RBP3.38□□□□□ -1.87
VPS53-219ENST00000576019 RPS28P62857 69 aaKnown RBP3.38□□□□□ -1.87
VPS53-219ENST00000576019 OR8B8Q15620 311 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 LRRC28Q86X40 367 aaPredicted RBP3.38□□□□□ -1.87
VPS53-219ENST00000576019 MSRB3Q8IXL7 192 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 TERB2Q8NHR7 220 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 ZC2HC1AQ96GY0 325 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 OR8B2Q96RD0 313 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 IMMP2LQ96T52 175 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 C12orf57Q99622 126 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 LAMTOR3Q9UHA4 124 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 APLNQ9ULZ1 77 aa3.38□□□□□ -1.87
VPS53-219ENST00000576019 IRGMA1A4Y4 181 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 H7BYZ3 331 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 M0R378 163 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 CCL22O00626 93 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 DLEU1O43261 78 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 CDS2O95674 445 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 IFNGP01579 166 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 TRGC2P03986 189 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 GZMBP10144 247 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 COX4I1P13073 169 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 S100A11P31949 105 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 EIF5AP63241 154 aaKnown RBP3.37□□□□□ -1.87
VPS53-219ENST00000576019 PLCXD2Q0VAA5 305 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 BIKQ13323 160 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 ZNF141Q15928 474 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 BORCS8Q96FH0 119 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 CACYBPQ9HB71 228 aaKnown RBP3.37□□□□□ -1.87
VPS53-219ENST00000576019 LAMTOR2Q9Y2Q5 125 aa3.37□□□□□ -1.87
VPS53-219ENST00000576019 IGKV2D-24A0A075B6R9 120 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 A0A1B0GU33 70 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 FAM107AO95990 144 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 BPGMP07738 259 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 HTR1AP08908 422 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 PSMB8P28062 276 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 EIF2B2P49770 351 aaKnown RBP3.36□□□□□ -1.87
VPS53-219ENST00000576019 NNATQ16517 81 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 RTL8BQ17RB0 113 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 C1orf134Q5TEV5 83 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 AGTRAPQ6RW13 159 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 C10orf99Q6UWK7 81 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 TRAPPC6BQ86SZ2 158 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 OR4K15Q8NH41 348 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms