RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 A8MWV9 139 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 P01737 135 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 OCC1Q8TAD7 63 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 LINC00476Q8WZB0 136 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 SMIM7Q9BQ49 75 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 PHLDA3Q9Y5J5 127 aa6.72□□□□□ -1.33
CCDC40-214ENST00000575431 TRAV26-1A0A087WT03 109 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 TMSB15BA0A087X1C1 80 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 GRIFINA4D1Z8 144 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 C19orf71A6NCJ1 209 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 PGPEP1LA6NFU8 196 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 H3BVH4 76 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 RS1O15537 224 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 OR5AL1P0C617 328 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 HOXA5P20719 270 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 CEBPGP53567 150 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 FHL2Q14192 279 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 CLLU1Q5K131 121 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 ZFP82Q8N141 532 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 PCNPQ8WW12 178 aaKnown RBP6.71□□□□□ -1.34
CCDC40-214ENST00000575431 SSBP4Q9BWG4 385 aaPredicted RBP6.71□□□□□ -1.34
CCDC40-214ENST00000575431 SCRT2Q9NQ03 307 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 HHLA3Q9XRX5 114 aa6.71□□□□□ -1.34
CCDC40-214ENST00000575431 F2Z2F3 143 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 RHODO00212 210 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 LY6G6CO95867 125 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 IGHV3-53P01767 116 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 CRYBA4P53673 196 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 RNF212Q495C1 297 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 ZFP2Q6ZN57 461 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 FAM231DQ6ZW35 169 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 POM121L12Q8N7R1 296 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 OR2D3Q8NGH3 330 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 ZNF479Q96JC4 524 aa6.7□□□□□ -1.34
CCDC40-214ENST00000575431 TRBV6-4A0A1B0GX49 114 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 A0A1W2PPQ1 181 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 PAX4O43316 350 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 SNAI2O43623 268 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 NUDT3O95989 172 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 FAM3BP58499 235 aaPredicted RBP6.69□□□□□ -1.34
CCDC40-214ENST00000575431 RPL19P84098 196 aaKnown RBP6.69□□□□□ -1.34
CCDC40-214ENST00000575431 TMEM241Q24JQ0 296 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 CFAP126Q5VTH2 177 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 ZNF575Q86XF7 245 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 NUDT10Q8NFP7 164 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 NUDT11Q96G61 164 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 VSIG2Q96IQ7 327 aa6.69□□□□□ -1.34
CCDC40-214ENST00000575431 A0A0J9YY99 117 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 M0R381 172 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 SFTA3P0C7M3 94 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 CCL18P55774 89 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 CACNG7P62955 275 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 IFITM2Q01629 132 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 MRPL23Q16540 153 aaKnown RBP6.68□□□□□ -1.34
CCDC40-214ENST00000575431 CT83Q5H943 113 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 SOHLH1Q5JUK2 328 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 SPANXN1Q5VSR9 72 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 DMRTA1Q5VZB9 504 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 WDR73Q6P4I2 378 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 SH2D6Q7Z4S9 175 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 LINC01551Q86U37 167 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 UBE2DNLQ8IWF7 75 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 FER1L6-AS1Q8NA97 138 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 SFRP2Q96HF1 295 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 RPP21Q9H633 154 aaKnown RBP6.68□□□□□ -1.34
CCDC40-214ENST00000575431 NAT8Q9UHE5 227 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 ICOSQ9Y6W8 199 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 MUC4Q99102 2169 aa6.68□□□□□ -1.34
CCDC40-214ENST00000575431 A8MWL6 223 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 K7EN84 100 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 GATCO43716 136 aaKnown RBP6.67□□□□□ -1.34
CCDC40-214ENST00000575431 NXPH4O95158 308 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 IGLC6P0CF74 106 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 GATA1P15976 413 aaPredicted RBP6.67□□□□□ -1.34
CCDC40-214ENST00000575431 ERVFC1-1P60608 527 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 RHOHQ15669 191 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 C15orf54Q8N8G6 183 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 PRADC1Q9BSG0 188 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 RNASE7Q9H1E1 156 aaKnown RBP6.67□□□□□ -1.34
CCDC40-214ENST00000575431 OSTCQ9NRP0 149 aa6.67□□□□□ -1.34
CCDC40-214ENST00000575431 A0A096LPF7 62 aa6.66□□□□□ -1.34
CCDC40-214ENST00000575431 C9JQL5 133 aa6.66□□□□□ -1.34
CCDC40-214ENST00000575431 SRSF3P84103 164 aaKnown RBP6.66□□□□□ -1.34
CCDC40-214ENST00000575431 UQCC3Q6UW78 93 aa6.66□□□□□ -1.34
CCDC40-214ENST00000575431 OR10AG1Q8NH19 301 aa6.66□□□□□ -1.34
CCDC40-214ENST00000575431 FAM231BA6NCW3 169 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 SMIM17P0DL12 118 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 SRIP30626 198 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 FOXA3P55318 350 aaPredicted RBP6.65□□□□□ -1.34
CCDC40-214ENST00000575431 RPL23P62829 140 aaKnown RBP6.65□□□□□ -1.34
CCDC40-214ENST00000575431 NEGR1Q7Z3B1 354 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 SLC25A29Q8N8R3 303 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 ISOC2Q96AB3 205 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 AP1S3Q96PC3 154 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 TPPP3Q9BW30 176 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 CNFNQ9BYD5 112 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 GFRA4Q9GZZ7 299 aa6.65□□□□□ -1.34
CCDC40-214ENST00000575431 IGHV3-73A0A0B4J1V6 119 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 K7EQD1 137 aa6.64□□□□□ -1.35
CCDC40-214ENST00000575431 CRYGDP07320 174 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms