RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 KRTAP17-1Q9BYP8 105 aa0.9□□□□□ -2.27
CHD3-217ENST00000574022 AGPAT4-IT1Q9H0P7 198 aa0.9□□□□□ -2.27
CHD3-217ENST00000574022 CYSTM1Q9H1C7 97 aa0.9□□□□□ -2.27
CHD3-217ENST00000574022 BOKQ9UMX3 212 aaPredicted RBP0.9□□□□□ -2.27
CHD3-217ENST00000574022 SERP1Q9Y6X1 66 aa0.9□□□□□ -2.27
CHD3-217ENST00000574022 DIDO1Q9BTC0 2240 aaKnown RBP0.9□□□□□ -2.27
CHD3-217ENST00000574022 KTN1Q86UP2 1357 aaKnown RBP0.9□□□□□ -2.27
CHD3-217ENST00000574022 PTPRMP28827 1452 aa0.9□□□□□ -2.27
CHD3-217ENST00000574022 CDK12Q9NYV4 1490 aaPredicted RBP0.9□□□□□ -2.27
CHD3-217ENST00000574022 DAPK1P53355 1430 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 RTTNQ86VV8 2226 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 FREM1Q5H8C1 2179 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 MYOFQ9NZM1 2061 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 CTTNBP2Q8WZ74 1663 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 MRC2Q9UBG0 1479 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 IGKV3-7A0A075B6H7 116 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 TRBV10-1A0A0K0K1A3 114 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 C20orf202A1L168 122 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 SNCGO76070 127 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 NDUFB6O95139 128 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 GYPBP06028 91 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 SMIM6P0DI80 62 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 SLC25A6P12236 298 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 IL9P15248 144 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 TPPP2P59282 170 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 PPP3R1P63098 170 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 SPATA45Q537H7 98 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 Q6AWC8 147 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 RPL7L1Q6DKI1 246 aaKnown RBP0.89□□□□□ -2.27
CHD3-217ENST00000574022 DMAC1Q96GE9 116 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 C14orf144Q96I85 54 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 OBSCN-AS1Q96MR7 158 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 ATG5Q9H1Y0 275 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 MRPL36Q9P0J6 103 aaKnown RBP0.89□□□□□ -2.27
CHD3-217ENST00000574022 NDUFA12Q9UI09 145 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 ALPK2Q86TB3 2170 aa0.89□□□□□ -2.27
CHD3-217ENST00000574022 TNRC6AQ8NDV7 1962 aaKnown RBP0.88□□□□□ -2.27
CHD3-217ENST00000574022 LAMB1P07942 1786 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 E9PCH4 1651 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 ZNF142P52746 1687 aaPredicted RBP0.88□□□□□ -2.27
CHD3-217ENST00000574022 SMARCA2P51531 1590 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 NRKQ7Z2Y5 1582 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 CXorf51AA0A1B0GTR3 108 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 MCRIP1C9JLW8 97 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 APOC4-APOC2K7ER74 178 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 TNFP01375 233 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 IGHV3-30P01768 117 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 APOC2P02655 101 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 IGHV3-30-5P0DP03 117 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 PDE6GP18545 87 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 RPL37AP61513 92 aaKnown RBP0.88□□□□□ -2.27
CHD3-217ENST00000574022 Q56UQ5 140 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 C12orf73Q69YU5 71 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 MRPL54Q6P161 138 aaKnown RBP0.88□□□□□ -2.27
CHD3-217ENST00000574022 SLC48A1Q6P1K1 146 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 LSM10Q969L4 123 aaKnown RBP0.88□□□□□ -2.27
CHD3-217ENST00000574022 LINC00526Q96FQ7 95 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 TMEM141Q96I45 108 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 ODF3Q96PU9 254 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 MRPL57Q9BQC6 102 aaKnown RBP0.88□□□□□ -2.27
CHD3-217ENST00000574022 C22orf24Q9Y442 160 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 PEAK1Q9H792 1746 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 EXPH5Q8NEV8 1989 aa0.88□□□□□ -2.27
CHD3-217ENST00000574022 PZPP20742 1482 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 PIGBOS1A0A0B4J2F0 54 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 TCRBV3S1A0A5B6 114 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 IGKV2-29A2NJV5 120 aaPredicted RBP0.87□□□□□ -2.27
CHD3-217ENST00000574022 A6NIN4 97 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 J3QKU1 62 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 TFF1P04155 84 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 RBP2P50120 134 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 CATR1Q13166 79 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 S100A7L2Q5SY68 101 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 C9orf153Q5TBE3 101 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 Q6ZS92 163 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 GTF2H5Q6ZYL4 71 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 NDUFA11Q86Y39 141 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 PPP3R2Q96LZ3 170 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 SPANXDQ9BXN6 97 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 MRPL35Q9NZE8 188 aaKnown RBP0.87□□□□□ -2.27
CHD3-217ENST00000574022 MUC22E2RYF6 1773 aaPredicted RBP0.87□□□□□ -2.27
CHD3-217ENST00000574022 RREB1Q92766 1687 aa0.87□□□□□ -2.27
CHD3-217ENST00000574022 CCNB3Q8WWL7 1395 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 RBBP6Q7Z6E9 1792 aaKnown RBP0.86□□□□□ -2.27
CHD3-217ENST00000574022 DLEC1Q9Y238 1755 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 MAPKBP1O60336 1514 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 HIGD1CA8MV81 97 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 CCKP06307 115 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 CBLN1P23435 193 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 NPC2P61916 151 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 UBE2G1P62253 170 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 C9orf116Q5BN46 136 aaPredicted RBP0.86□□□□□ -2.27
CHD3-217ENST00000574022 KRTAP13-1Q8IUC0 172 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 SBSPONQ8IVN8 264 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 IFI27L1Q96BM0 104 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 RPRMQ9NS64 109 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 IER3IP1Q9Y5U9 82 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 CASP8AP2Q9UKL3 1982 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 PCNX2A6NKB5 2137 aa0.86□□□□□ -2.27
CHD3-217ENST00000574022 NWD2Q9ULI1 1742 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms