RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 CDPF1Q6NVV7 123 aa12.13□□□□□ -0.47
CHD3-214ENST00000572579 Q8N3U1 123 aa12.13□□□□□ -0.47
CHD3-214ENST00000572579 TRBV6-4A0A1B0GX49 114 aa12.12□□□□□ -0.47
CHD3-214ENST00000572579 UFSP1Q6NVU6 142 aa12.12□□□□□ -0.47
CHD3-214ENST00000572579 SH2D6Q7Z4S9 175 aa12.12□□□□□ -0.47
CHD3-214ENST00000572579 JPT2Q9H910 190 aa12.12□□□□□ -0.47
CHD3-214ENST00000572579 IBA57-AS1B1ANH7 110 aa12.11□□□□□ -0.47
CHD3-214ENST00000572579 EREGO14944 169 aa12.11□□□□□ -0.47
CHD3-214ENST00000572579 UBE2G2P60604 165 aa12.11□□□□□ -0.47
CHD3-214ENST00000572579 SAMD10Q9BYL1 202 aa12.11□□□□□ -0.47
CHD3-214ENST00000572579 CYTL1Q9NRR1 136 aa12.11□□□□□ -0.47
CHD3-214ENST00000572579 ARL2-SNX15V9GYD0 113 aa12.11□□□□□ -0.47
CHD3-214ENST00000572579 MYCBP2O75592 4640 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 FXYD6-FXYD2A0A087WZ82 144 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 K7EQM0 130 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 LINC00694P0DN24 101 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 PPT1P50897 306 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 FGF8P55075 233 aaPredicted RBP12.1□□□□□ -0.47
CHD3-214ENST00000572579 RHOHQ15669 191 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 SAPCD1Q5SSQ6 148 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 PRADC1Q9BSG0 188 aa12.1□□□□□ -0.47
CHD3-214ENST00000572579 FAM74A7A6NL05 159 aa12.09□□□□□ -0.47
CHD3-214ENST00000572579 LELP1Q5T871 98 aa12.09□□□□□ -0.47
CHD3-214ENST00000572579 C10orf126Q8N4M7 172 aa12.09□□□□□ -0.47
CHD3-214ENST00000572579 INO80EQ8NBZ0 244 aaPredicted RBP12.09□□□□□ -0.47
CHD3-214ENST00000572579 OR2T35Q8NGX2 323 aa12.09□□□□□ -0.47
CHD3-214ENST00000572579 PARLQ9H300 379 aa12.09□□□□□ -0.47
CHD3-214ENST00000572579 CTXND1A0A1B0GTU2 59 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 EPM2AB3EWF7 344 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 CIDEAO60543 219 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 IGHV3-30P01768 117 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 IGHV3-33P01772 117 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 IGHV3-30-3P0DP02 117 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 IGHV3-30-5P0DP03 117 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 HAMPP81172 84 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 DMRTA1Q5VZB9 504 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 GTSF1LQ9H1H1 148 aa12.08□□□□□ -0.48
CHD3-214ENST00000572579 PEX7O00628 323 aa12.07□□□□□ -0.48
CHD3-214ENST00000572579 GCSHP23434 173 aa12.07□□□□□ -0.48
CHD3-214ENST00000572579 OR10J3Q5JRS4 329 aa12.07□□□□□ -0.48
CHD3-214ENST00000572579 Q86TA4 180 aa12.07□□□□□ -0.48
CHD3-214ENST00000572579 C14orf178Q8N769 122 aaPredicted RBP12.07□□□□□ -0.48
CHD3-214ENST00000572579 ATP6V0E2Q8NHE4 81 aa12.07□□□□□ -0.48
CHD3-214ENST00000572579 ZC2HC1AQ96GY0 325 aa12.07□□□□□ -0.48
CHD3-214ENST00000572579 BORCS7-ASMTA0A0B4J1R7 106 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 TRAV8-6A0A0B4J262 113 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 FABP5P3A8MUU1 101 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 IFNA7P01567 189 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 MGST1P10620 155 aaKnown RBP12.06□□□□□ -0.48
CHD3-214ENST00000572579 WFDC2Q14508 124 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 ZFP69Q49AA0 526 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 COX8CQ7Z4L0 72 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 Q9HAA7 133 aa12.06□□□□□ -0.48
CHD3-214ENST00000572579 GAGE12JA6NER3 117 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 KRBOX1C9JBD0 128 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 SMLR1H3BR10 107 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 SMR3BP02814 79 aaPredicted RBP12.05□□□□□ -0.48
CHD3-214ENST00000572579 FHITP49789 147 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 GAGE1Q13065 139 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 GAGE4Q13068 117 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 GAGE5Q13069 117 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 GAGE13Q4V321 117 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 ZFP2Q6ZN57 461 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 FAM30AQ9NZY2 134 aa12.05□□□□□ -0.48
CHD3-214ENST00000572579 LGALSLQ3ZCW2 172 aaPredicted RBP12.04□□□□□ -0.48
CHD3-214ENST00000572579 PIK3CD-AS1Q5SR53 167 aa12.04□□□□□ -0.48
CHD3-214ENST00000572579 DNLZQ5SXM8 178 aa12.04□□□□□ -0.48
CHD3-214ENST00000572579 IL36BQ9NZH7 164 aa12.04□□□□□ -0.48
CHD3-214ENST00000572579 GRIFINA4D1Z8 144 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 A8MWV9 139 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 B4DEV8 164 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 H3BVH4 76 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 SH2D1AO60880 128 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 ARMS2P0C7Q2 107 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 ASIPP42127 132 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 Q5VSD8 79 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 Q8N814 137 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 HIST1H2BAQ96A08 127 aa12.03□□□□□ -0.48
CHD3-214ENST00000572579 SRRM2Q9UQ35 2752 aaKnown RBP12.03□□□□□ -0.48
CHD3-214ENST00000572579 M0R036 132 aa12.02□□□□□ -0.49
CHD3-214ENST00000572579 ARPC5O15511 151 aa12.02□□□□□ -0.49
CHD3-214ENST00000572579 S100A4P26447 101 aaKnown RBP12.02□□□□□ -0.49
CHD3-214ENST00000572579 AKR1C8PQ5T2L2 129 aa12.02□□□□□ -0.49
CHD3-214ENST00000572579 DNAJC30Q96LL9 226 aa12.02□□□□□ -0.49
CHD3-214ENST00000572579 IGLV5-52A0A0A0MRZ9 124 aa12.01□□□□□ -0.49
CHD3-214ENST00000572579 MAP1LC3B2A6NCE7 125 aa12.01□□□□□ -0.49
CHD3-214ENST00000572579 PSCAO43653 123 aa12.01□□□□□ -0.49
CHD3-214ENST00000572579 INAFM2P0DMQ5 153 aa12.01□□□□□ -0.49
CHD3-214ENST00000572579 ZNF674Q2M3X9 581 aa12.01□□□□□ -0.49
CHD3-214ENST00000572579 DAZ4Q86SG3 579 aaKnown RBP12.01□□□□□ -0.49
CHD3-214ENST00000572579 MAP1LC3BQ9GZQ8 125 aa12.01□□□□□ -0.49
CHD3-214ENST00000572579 DAZ3Q9NR90 486 aaKnown RBP12.01□□□□□ -0.49
CHD3-214ENST00000572579 NKX6-2Q9C056 277 aaPredicted RBP12□□□□□ -0.49
CHD3-214ENST00000572579 ZFP30Q9Y2G7 519 aa12□□□□□ -0.49
CHD3-214ENST00000572579 FLG2Q5D862 2391 aaPredicted RBP11.99□□□□□ -0.49
CHD3-214ENST00000572579 A0A087WWL8 130 aa11.99□□□□□ -0.49
CHD3-214ENST00000572579 TRBV6-1A0A0K0K1D8 114 aa11.99□□□□□ -0.49
CHD3-214ENST00000572579 LTAP01374 205 aa11.99□□□□□ -0.49
CHD3-214ENST00000572579 OR11H4Q8NGC9 324 aa11.99□□□□□ -0.49
CHD3-214ENST00000572579 NTN5Q8WTR8 489 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms